Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03306 and BPUM_1953
See
Amino acid alignment /
Visit
BSNT_03306 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_03306___yprB.1.24716.seq
# -bsequence dna-align/BPUM_1953___yprB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03306___yprB-BPUM_1953___yprB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03306___yprB-BPUM_1953___yprB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03306___yprB
# 2: BPUM_1953___yprB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1406
# Identity: 820/1406 (58.3%)
# Similarity: 820/1406 (58.3%)
# Gaps: 322/1406 (22.9%)
# Score: 2199.0
#
#
#=======================================
BSNT_03306___ 1 ATGTCATTAAAAGGGAAACTCCAGCGGATGAAAAAGCACATGGCGCTCGA 50
|||||.||||||||||||.|..|..|.|||||||||||..|..|||.|
BPUM_1953___y 1 ATGTCTTTAAAAGGGAAATTAAACAGAATGAAAAAGCATCTATCGCAC-- 48
BSNT_03306___ 51 CGAAGGAG-AACAA-AAAATAGAAGCAGGCAAACA--AGAA----AACC- 91
||..|| .|||| ||||..| ||| |.||||| |||| ||||
BPUM_1953___y 49 --AATCAGCCACAAGAAAACCG--GCA-GAAAACATCAGAAGGACAACCT 93
BSNT_03306___ 92 ---------ACTT-TGATGACATCCCGTTTTTAGAAGAGTGGGAGGCTTT 131
|||| .||..|.|||||.||||||.||||.|||||.||.||
BPUM_1953___y 94 CAGCCTGTGACTTCAGAAAATATCCCATTTTTAAAAGAATGGGAAGCATT 143
BSNT_03306___ 132 TGGCATGAAGCCTT-TCATCTTCGAAGATGAATATTGCCTCATCAGAGAA 180
.||..||..||||| |||| ||.||.|||...|.|||.||.||..|.|||
BPUM_1953___y 144 AGGTGTGTCGCCTTATCAT-TTTGAGGATTCCTTTTGTCTGATTCGGGAA 192
BSNT_03306___ 181 G------------TAGAATATCCGCTTTCTCACCGCCATGG--GTTATAC 216
| ||||..|||.| ||||| |.|||.|
BPUM_1953___y 193 GTCACCTATTCATTAGATGATCAG------------CATGGGCGCTATTC 230
BSNT_03306___ 217 AGCTTTTCTGAGCTTGAGGAAGTGATCACACTG-----TGGAATCAAAGC 261
.|||.|.|||||...|.|||| ||.|| ||||||.|||||
BPUM_1953___y 231 --GTTTGCGGAGCTGCCGAAAGT-----CATTGAGCAATGGAATGAAAGC 273
BSNT_03306___ 262 GGCCTGTCGCATACGTTGTCAGCAAAAGGGTATAA----CAAAAACAACC 307
|||.|...||||.||.|.||.||.||||||||..| | ||.|.|
BPUM_1953___y 274 GGCATCCAGCATTCGCTATCGGCTAAAGGGTACGAGCCGC----ACGAGC 319
BSNT_03306___ 308 TCTTTTTCTTTGATACAGAAACAACCGG----TCTTGGGGGCGGAGCTGG 353
|.||||||||||||||.||||||||.|| ||| |||||..|.||
BPUM_1953___y 320 TGTTTTTCTTTGATACTGAAACAACAGGATTATCT----GGCGGTACGGG 365
BSNT_03306___ 354 GAATACCATTTTTTTGCTTGGGCATGCGAGAGTATATGAAGACCGAGTGA 403
.||||..||.||.||||||||.||.||..|.||.|.|...|||..||||.
BPUM_1953___y 366 AAATATGATCTTCTTGCTTGGACACGCACGTGTCTTTTCTGACAAAGTGG 415
BSNT_03306___ 404 CAGTCAAACAGCATCTTTTGCCCAAACCGGGGAACGAAGTCGC-CTTGTA 452
..||.|||||||||||..|..||||.||.||.||.|||||.|| ||| ||
BPUM_1953___y 416 TGGTGAAACAGCATCTGCTCACCAATCCAGGAAATGAAGTGGCTCTT-TA 464
BSNT_03306___ 453 CCAAAGCTTTTTAAGCGAGGTTGACATTACATCACTTGTGACCTACAACG 502
|.||||||||.||...||.||..|..||..|||..|.||.||.||.||.|
BPUM_1953___y 465 CAAAAGCTTTCTAGATGAAGTAAATGTTGAATCGTTAGTTACATATAATG 514
BSNT_03306___ 503 GCAAAGCCTTTGATTGGCCGCAGGTGAAAACAAGGC--ACACCTT----- 545
|.|||.|.||||||||||||||.||||||||.||.| ||||.||
BPUM_1953___y 515 GTAAATCATTTGATTGGCCGCAAGTGAAAACGAGACATACACTTTTAAGA 564
BSNT_03306___ 546 GATCCGTGACAGACTTCC-GAAGCTTCCGGAGTTTGGCCACTTTGATCTT 594
|||| .|.|||| |.| |||||.||.||.|||||.|||||||||
BPUM_1953___y 565 GATC-------AAATTCCTGCA-CTTCCTGAATTCGGCCATTTTGATCTT 606
BSNT_03306___ 595 TTGCATGGAGCTAGACGCCTGTGGAAACACAAA-ATGGACCG-TG----T 638
|||||.|||.|||||||..|||||||.||.||| |||.||.| || |
BPUM_1953___y 607 TTGCACGGATCTAGACGATTGTGGAAGCATAAATATGAACGGATGGCGCT 656
BSNT_03306___ 639 ATCTCTTGGCACGGTTGAAAAAGAGGAGCT---CG-GCATCCGCAGGCTA 684
||||.|| ||.||||||||.||.|| || ||| ||..
BPUM_1953___y 657 ATCTGTT------GTGGAAAAAGAAGAACTACACGTGCA-------GCGT 693
BSNT_03306___ 685 GAA---GACACACCGGGCTACTTGGCGCCAATGCTTTACTTTCATTTTAT 731
||| |||||.|||||.|..|||||.||.|||.||||.|||||||||.|
BPUM_1953___y 694 GAAAACGACACGCCGGGGTTTTTGGCACCGATGATTTATTTTCATTTTTT 743
BSNT_03306___ 732 CAAGGCGCAAGAGCCGGATCTTTTAAAAGGTGTCCTGCATCATAATGAAA 781
.||||..|||.|.|||.|.||..|..||||..||.||..||||||||||.
BPUM_1953___y 744 AAAGGAACAAAACCCGAAGCTGATTGAAGGAATCTTGACTCATAATGAAT 793
BSNT_03306___ 782 TGGATGTGTTATC---ACTCA-TTTCATTGTACATCCATATGTCTAAAAA 827
|.||.||.||||| |.||| |.|| |||||.|||.|.||.|||||
BPUM_1953___y 794 TAGACGTCTTATCGTTAATCAGTCTC----TACATTCATCTATCCAAAAA 839
BSNT_03306___ 828 AATCCTTTCAGAATCACATGCGCCAAAAGAACACA--GTGAAGCCTATGC 875
|||.||.||.| ...||||...|||.||||||| |.|||| |||||
BPUM_1953___y 840 AATACTATCTG---TGGATGCAGTAAAGGAACACAATGAGAAG--TATGC 884
BSNT_03306___ 876 TATGGCGAAATGGTTTATGGCTCATAAAGAAACGG-------ACCAAGCG 918
..|.||.|..|||..|.|.|||||| ||| |..||||.
BPUM_1953___y 885 GCTCGCTAGGTGGCATCTTGCTCAT-------CGGGATGTACAGGAAGCA 927
BSNT_03306___ 919 ATGAAGCAGTTGGA----------AAGGCTTATAGAAAAATCGTTTGA-- 956
|..|||||.|||.| ||.|||.|| |||||
BPUM_1953___y 928 ACAAAGCATTTGCAGGAATTAACGAATGCTGAT----------TTTGAGC 967
BSNT_03306___ 957 ----GGACCAGGACAGTGCACGGCT--GGATTTATCGCTCCTGTACAAAA 1000
|||.|||| ||.|| .|||.|.||..|.|..||.|||.
BPUM_1953___y 968 ATGCGGATCAGG--------CGTCTTATGATCTTTCATTGCAATATAAAC 1009
BSNT_03306___ 1001 AACAAAATCGCTTGGAAG-------AAGCAGTGCCGCTTT---GGGAA-- 1038
.|||||| |||| ||||.||.|...|.| |||||
BPUM_1953___y 1010 GACAAAA-------GAAGTGGAAACAAGCGGTTCAAATATGGGGGGAATT 1052
BSNT_03306___ 1039 ---------AAGC--TGTCCCGCTCGC---AAAACCAGAAGTGCAGGTAC 1074
|||| |||||...|.|| |||| ||.|||
BPUM_1953___y 1053 ATTTGCATCAAGCGATGTCCATTTAGCATTAAAA--------GCGGGT-- 1092
BSNT_03306___ 1075 GCTGCTGTAATAGAGCTCGCGAAATATTTTGAGCATAAGAAAAAAAAATT 1124
||||||||.|||||.||| |||.||..|
BPUM_1953___y 1093 ---------ATAGAGCTTGCGAAGTAT--------------AAAGAACAT 1119
BSNT_03306___ 1125 CG-GAAAAGCATTGCAAATAGCAGAGCAATTGCTT-----------AGCG 1162
|| ||||| |.|||..|||.||..| ||| |.||
BPUM_1953___y 1120 CGTGAAAA-------AGATACAAGATCAGCT-CTTTCTGTCACTGAATCG 1161
BSNT_03306___ 1163 -----ATGCGGCATGC------TTA--TCAGAGAAAGAAACTGAAAAACT 1199
|| |||.| ||| ||||.| .|||||||||.||||
BPUM_1953___y 1162 TTATTAT----CATTCTCCTCGTTAAGTCAGCG--GGAAACTGAAGAACT 1205
BSNT_03306___ 1200 GCATGTGAGAATTGC-------CCGGCTGAAGAGGAAATATTCCTCT--- 1239
|||.|| || .|||||...||||||| .||
BPUM_1953___y 1206 -----TGAAAA--GCGAAAAAAACGGCTTTTGAGGAAA------GCTGGG 1242
BSNT_03306___ 1240 ---TAA 1242
|||
BPUM_1953___y 1243 CAATAA 1248
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.