Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03302 and BPUM_1951

See Amino acid alignment / Visit BSNT_03302 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:48
# Commandline: needle
#    -asequence dna-align/BSNT_03302___ypsB.1.24716.seq
#    -bsequence dna-align/BPUM_1951___ypsB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03302___ypsB-BPUM_1951___ypsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03302___ypsB-BPUM_1951___ypsB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03302___ypsB
# 2: BPUM_1951___ypsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 306
# Identity:     252/306 (82.4%)
# Similarity:   252/306 (82.4%)
# Gaps:           9/306 ( 2.9%)
# Score: 1066.0
# 
#
#=======================================

BSNT_03302___      1 ATGCTTGCTGATAAAGTAAAGCTTTCTGCGAAAGAAATTTTGGAAAAAGA     50
                     |||||||||||||||||||||||||||||||||||||||||.||||||||
BPUM_1951___y      1 ATGCTTGCTGATAAAGTAAAGCTTTCTGCGAAAGAAATTTTAGAAAAAGA     50

BSNT_03302___     51 ATTTAAAACAGGCGTTAGAGGCTACAAGCAAGAAGACGTTGACAAATTTT    100
                     ||||||||||||.||.|||||.|||||.||||||||.||.||.|||||||
BPUM_1951___y     51 ATTTAAAACAGGTGTCAGAGGATACAAACAAGAAGAAGTCGATAAATTTT    100

BSNT_03302___    101 TAGATATGATTATTAAGGATTATGAAACCTTCCATCAAGAAATTGAAGAA    150
                     ||||||||.|.|||||.||.|||||.||.|||.|.||||||||.|||.|.
BPUM_1951___y    101 TAGATATGGTCATTAAAGACTATGAGACATTCAACCAAGAAATCGAAAAG    150

BSNT_03302___    151 CTGCAGCAGGAAAATCTTCAGCTGAAAAAACAGCTTGAAGAAGC------    194
                     ||.||.||.|||||.||.||..||...|||||||||||||||||      
BPUM_1951___y    151 CTTCAACAAGAAAACCTCCATTTGTCTAAACAGCTTGAAGAAGCCGTTGA    200

BSNT_03302___    195 ---AAGTAAAAAACAGCCTGTGCAATCTAACACAACAAACTTTGATATTT    241
                        |.|.||||.||||||||..||.|||||.|||||||||||||||||||
BPUM_1951___y    201 GCAAGGGAAAAGACAGCCTGCACAGTCTAATACAACAAACTTTGATATTT    250

BSNT_03302___    242 TAAAACGGCTGTCTAACTTAGAAAAACACGTTTTTGGCAGCAAGCTTTAT    291
                     |||||.|.||.||||||.|.||.|||||||||||.||.|||||.||||||
BPUM_1951___y    251 TAAAAAGACTATCTAACCTTGAGAAACACGTTTTCGGAAGCAAACTTTAT    300

BSNT_03302___    292 GATTGA    297
                     ||||||
BPUM_1951___y    301 GATTGA    306


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