Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03299 and BPUM_1946
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_03299___ypvA.1.24716.seq
# -bsequence dna-align/BPUM_1946___ypvA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03299___ypvA-BPUM_1946___ypvA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03299___ypvA-BPUM_1946___ypvA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03299___ypvA
# 2: BPUM_1946___ypvA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2010
# Identity: 1418/2010 (70.5%)
# Similarity: 1418/2010 (70.5%)
# Gaps: 156/2010 ( 7.8%)
# Score: 4736.0
#
#
#=======================================
BSNT_03299___ 1 GTGACAACATCACGTTTGCCTTTTTCTTTAACGAAAACAA-AGAATTTTT 49
||||||.||||.||||||||||||||.|||.| ||||.|| |.|||||||
BPUM_1946___y 1 GTGACAGCATCTCGTTTGCCTTTTTCATTATC-AAAAGAACATAATTTTT 49
BSNT_03299___ 50 ATGAAGAATTGAACAATTGGATTGGTGACGTGTTTTACGATATCCTTCCC 99
|.||||||.||..|||.|||||||||||.|||||.||.||.||..|.||.
BPUM_1946___y 50 ACGAAGAACTGGGCAACTGGATTGGTGATGTGTTCTATGACATTTTGCCA 99
BSNT_03299___ 100 GAAAAAGGGTTTGATCTTCGGGACGAGCAAGTATTTATGGCTTTTCAGCT 149
|||||.||.|||||||||||.||.||.|||.||||||||||||||||.||
BPUM_1946___y 100 GAAAAGGGCTTTGATCTTCGAGATGAACAAATATTTATGGCTTTTCAACT 149
BSNT_03299___ 150 GGAGCGGGCGTTTAAAGAGAAAAAAGTCATGTTCGCCGAAGCTGGAGTGG 199
.||..|.||.||||||||.||||..||.|||||.|||||||||||.||.|
BPUM_1946___y 150 AGAAAGAGCCTTTAAAGAAAAAAGTGTGATGTTTGCCGAAGCTGGGGTAG 199
BSNT_03299___ 200 GAACGGGGAAAACGCTGGTTTATCTTCTTTTTGCAATCAGCTATGCAAGG 249
|.||.||.|||||..|.||||||||..|.|||||..|||..|||||||||
BPUM_1946___y 200 GCACAGGCAAAACCATCGTTTATCTATTATTTGCGGTCACATATGCAAGG 249
BSNT_03299___ 250 TATGTCGGCAAACCCGCCATCATCGCTTGTGCAGATGAAACATTAATTGA 299
|||...||.|||||.||.||.||.|||||||||||.|||||.||||||||
BPUM_1946___y 250 TATACAGGGAAACCAGCGATTATTGCTTGTGCAGACGAAACGTTAATTGA 299
BSNT_03299___ 300 ACAGCTGGTGAAAAAAGAGGGCGATATTTCTAAGCTGGCTGAGCATCTTG 349
||||||.||||||.|||||||.|||||.|.|||..|.||..|.||.||||
BPUM_1946___y 300 ACAGCTAGTGAAACAAGAGGGTGATATCTATAAAATTGCCAATCACCTTG 349
BSNT_03299___ 350 ATCTGAAAATTGATACAAGACT--GTCAAAATCACATGAACAATATTTAT 397
||.|..||||.|||.|.|||.| || |||||.|||||.||||||||||
BPUM_1946___y 350 ATATTCAAATAGATGCGAGATTAAGT--AAATCGCATGACCAATATTTAT 397
BSNT_03299___ 398 GCTTGAAGAAGCTTGAAAAAACAATGCAGCGTTCTGATGATGATAAATGG 447
||||.|||||..|.||.|||||.|||||||||...||||||||.||.|||
BPUM_1946___y 398 GCTTAAAGAAATTAGAGAAAACCATGCAGCGTGAAGATGATGAGAAGTGG 447
BSNT_03299___ 448 CTGGATCTTTATGAGTCGTTACCGTCATTTGTCCACGAGTCACAGGCGAT 497
||.|||.|||||||.|||.|.||.||.|||||.||.||.|||||.|.|||
BPUM_1946___y 448 CTCGATATTTATGAATCGCTTCCTTCGTTTGTTCATGAATCACATGGGAT 497
BSNT_03299___ 498 GCAGCGCTTTTATCCGTATGGCGACCGTAAGCAGTACGCAAATCTATCGA 547
||||..|||||||||||||||.||.||.|||.|||||.||.|.|||||.|
BPUM_1946___y 498 GCAGAACTTTTATCCGTATGGTGATCGGAAGGAGTACCCAGAGCTATCCA 547
BSNT_03299___ 548 ATGAAGAGTGGTCTGACGTA--AGCTACGACTCGTTTCAGGACTGTCTGA 595
||||.||.||||| ||||| .||||.||||||||||||||||||.|||
BPUM_1946___y 548 ATGATGAATGGTC--ACGTATTGGCTATGACTCGTTTCAGGACTGTTTGA 595
BSNT_03299___ 596 CTTGTGATATGAGACACAGATGCGGTCTGACACTT-TCCAGAGATTACTA 644
|.|||||||||.|.||..|.||.|||.||| |.|| ||.||||||.|.||
BPUM_1946___y 596 CGTGTGATATGCGTCATCGCTGTGGTTTGA-ATTTATCAAGAGATCATTA 644
BSNT_03299___ 645 TCGCAAGTCAACGGACTTAATCATATGTTCCCATGATTTTTATATGGAGC 694
.||.||..||||.|||.|.|||||.|||||.|||||||||||||||||||
BPUM_1946___y 645 CCGGAAAGCAACAGACCTCATCATCTGTTCTCATGATTTTTATATGGAGC 694
BSNT_03299___ 695 ATGTGTGGACGGAAGAATCACGCAAACGAGAGGGCCAGCTGCCGCT-CTT 743
||||||||||..|.|||||.||||||||.||.||.|||||.||||| |||
BPUM_1946___y 695 ATGTGTGGACAAAGGAATCCCGCAAACGCGAAGGTCAGCTTCCGCTGCTT 744
BSNT_03299___ 744 GCCTGATCATAGTGCAGTTGTATTTGATGAGGGGCA-CTTGTTAGAGTTT 792
||.||.||||||.||||||||||||||||.||.|| |||.|| ||.|||
BPUM_1946___y 745 -CCAGAACATAGTTCAGTTGTATTTGATGAAGGCCACCTTCTT-GAATTT 792
BSNT_03299___ 793 GCTGCGCAAAAAGCGCTAACCTATAGAGTGAAGCAGTCTACTCTTGAATT 842
||.|||||||||||.||.||.||..||||||||||.||.|..||.|||..
BPUM_1946___y 793 GCCGCGCAAAAAGCACTGACATACCGAGTGAAGCAATCCATGCTCGAAAC 842
BSNT_03299___ 843 GTTTTTAGAACGATTGCTGCAAAATGACATCAGAGAAGAGTTTGCAGAAT 892
.||||||||.||..||||.||.||.||.||..|.||.||||||||.|||.
BPUM_1946___y 843 CTTTTTAGAGCGCCTGCTTCATAACGATATACGTGAGGAGTTTGCCGAAC 892
BSNT_03299___ 893 TGATTGAAGATGCGCTT-CTCGCAAACGACGAATTTTTCTATGTTCTTTC 941
|..||||||||||.||| || .|||||||.||.||.|||||| .||||
BPUM_1946___y 893 TCGTTGAAGATGCACTTGCT-ACAAACGATGAGTTCTTCTAT-CTCTT-- 938
BSNT_03299___ 942 TGAAGAATCA------AAGGAAGT--AGCCGGTTCACACCGTTTAGAAAT 983
|.||.|| ||.|||.| || ||.|||||.||..|.|||||
BPUM_1946___y 939 ---AAAAACACATGCCAAAGAAATCAAG--GGCTCACATCGACTTGAAAT 983
BSNT_03299___ 984 AAAAAATGACCAG-CGTGTCAAAAAGGCG--GCGGAC-------GAGCTT 1023
|| | |||||..|..|||.| |||..| ||..|.
BPUM_1946___y 984 ------TG----GACGTGTGGATGAGGTGAAGCGTTCTGCAAGTGAATTG 1023
BSNT_03299___ 1024 TGCCGTTTACTTGATAAAATCGGTGAGGCACTTGTATTTGAGTCTGAAAT 1073
||...|||||||||.||||||||.||.|||||.||||||||.||.||.||
BPUM_1946___y 1024 TGTGATTTACTTGAAAAAATCGGAGAAGCACTCGTATTTGAATCAGAGAT 1073
BSNT_03299___ 1074 GTATACGATTGATCAATACGAGTTGTCAGTAGTGGAAGAATACGTTGAAC 1123
||||||.||||||||||||||.|||||.||.||.|||||.|||.||||||
BPUM_1946___y 1074 GTATACAATTGATCAATACGAATTGTCTGTTGTAGAAGAGTACATTGAAC 1123
BSNT_03299___ 1124 AAATGGCGTATTCATTATCTCTATATCAAAAGGATGCAATCAGCTGGCTG 1173
|||||||||||||..|.||.||.||||||||..||||.||.||||||||.
BPUM_1946___y 1124 AAATGGCGTATTCTCTGTCACTTTATCAAAAAAATGCGATTAGCTGGCTT 1173
BSNT_03299___ 1174 GAGAAAAAGGAAGCAGAATCAACTTTTGTCGTGATGCCGAGAACGGTAGC 1223
||.|||.|.|||..|||..||||.|||||.||||||||.|..||.||.||
BPUM_1946___y 1174 GAAAAACAAGAATTAGATACAACATTTGTTGTGATGCCAAAGACTGTCGC 1223
BSNT_03299___ 1224 AGAAGTACTTGGCGAAAAAGTGTTTTCTAAGAAAATTCCTTATATCTTTT 1273
|||.||.|||||.|||||.||.||.||..|.||||..||.||.||.||.|
BPUM_1946___y 1224 AGAGGTGCTTGGTGAAAAGGTATTCTCGCAAAAAAGACCATACATTTTCT 1273
BSNT_03299___ 1274 CTTCTGCTACGCTGTCAGAAGGCGGTTCGTTTGATTATATTGCCGACAGT 1323
||||||||||..||||.|||......||.|||||||||.|.||.||.|||
BPUM_1946___y 1274 CTTCTGCTACATTGTCTGAAAATCAATCCTTTGATTATTTAGCTGAAAGT 1323
BSNT_03299___ 1324 CTTGGGATTCATGATTATTTGTCATTAACTGTTGATTCCCCTTATGATTA 1373
|||||||||.|.|||||.||.|||.|.|.|||.|.|||.||.||||||||
BPUM_1946___y 1324 CTTGGGATTAAAGATTACTTATCAATGAGTGTCGCTTCGCCGTATGATTA 1373
BSNT_03299___ 1374 TGACGAGCAAATGAGTATTAATCTATACGCAAAAACAGATATGGCCGCT- 1422
.||.||.|||||||..|||.||.|..||| .|||...||.|||
BPUM_1946___y 1374 CGATGAACAAATGAAGATTTATTTCCACG-------GGATTCAGCAGCTT 1416
BSNT_03299___ 1423 ---GAACAA-----AAAACGGCTG-AAACGATTGAAACAATCA----AAC 1459
||.||| ||||.|.|.| ||..||| ||.||| ||.
BPUM_1946___y 1417 CAAGAGCAAGAAGCAAAAGGACAGCAAGTGAT-----CACTCAGCTGAAA 1461
BSNT_03299___ 1460 GTTACAAA----GGAAGAACGCTGGTGCTTTTCCCTTCTTTTGAAGAA-T 1504
|.| || |||.|..|.||..|..|.||||||||.|||||.||| |
BPUM_1946___y 1462 GAT---AATGGGGGACGGTCTCTCATTTTGTTCCCTTCATTTGATGAACT 1508
BSNT_03299___ 1505 TAAACGAGTTT------AAAG-AGCTGTCGGCGGCATGGGA------GCT 1541
|.| ||| |||| |||| .|.|||||.|.| .||
BPUM_1946___y 1509 TCA-----TTTCTTTAGAAAGCAGCT---TGAGGCATCGAATGAATCACT 1550
BSNT_03299___ 1542 GCCGTATCCA-ATTTTCTTCGAAGGTGATGAGGAAATCAGCAGCTTAGTA 1590
||| |.||.| .|.|.|||.||.||.||.||.||||||||.|...|.||.
BPUM_1946___y 1551 GCC-TTTCGACGTGTACTTTGAGGGAGACGAAGAAATCAGTACAATTGTT 1599
BSNT_03299___ 1591 GAGAAATTCCAAGAGGAAGAGGAAACAGTACTTTGTTCAGTTCACTTATG 1640
.|.||.|||||||..||.|||..|.|.||..|.||.||.||||||.|.||
BPUM_1946___y 1600 CAAAAGTTCCAAGCAGATGAGACATCTGTGTTATGCTCTGTTCACCTTTG 1649
BSNT_03299___ 1641 GGAAGGACTCGATATTCCCGGTGACGCATTGAAGAATGTTACCATTTGGT 1690
||||||.||.||||||||.||..|..||||.|..|||||...|||.|||.
BPUM_1946___y 1650 GGAAGGGCTGGATATTCCAGGACAATCATTAACAAATGTGGTCATCTGGG 1699
BSNT_03299___ 1691 CATTGCCTTTCCCGCCACACGATCCTGTATTTACAGCGAAGCGCAACGGA 1740
.|.|.||.|.||||||.||.|||||.|||||| ||.|||.||||||
BPUM_1946___y 1700 GACTTCCATACCCGCCTCATGATCCCGTATTT-----GAGGCGAAACGGA 1744
BSNT_03299___ 1741 GCGAA--AAAGGATCCGTTC--GAAGAAGTTGATCTGCCATATATGTTGT 1786
..||| ||||||| |.|| |..|||||.||.||.||.||||||.|..
BPUM_1946___y 1745 ATGAAGCAAAGGAT--GCTCGTGCTGAAGTCGACCTTCCGTATATGCTAC 1792
BSNT_03299___ 1787 TACGTGTACGGCAGGGCATCGGGCGCCTGATTCGCTCGAATCAAGA--CA 1834
|.||..|.||.||.||.||.||..|.||||||||..|.|..||||| ||
BPUM_1946___y 1793 TGCGCTTGCGACAAGGTATTGGAAGACTGATTCGGACAAGCCAAGATGCA 1842
BSNT_03299___ 1835 GCGGCTCGATTCACATTTACGCTGGC-----GGAGAAAATG-AACGCATC 1878
||..|.||.||.||||||..||.| | ||||||| |..||.||
BPUM_1946___y 1843 --GGAACCATCCATATTTACTTTGACCATAAG--GAAAATGCAGAGCTTC 1888
BSNT_03299___ 1879 ATTGATGAGGTCAAA---AA---GGTCTTGCCTGTTGAACCGCACATGAT 1922
| |.||.||| || |.|| ||||.| |||| ||..||.||
BPUM_1946___y 1889 A------AAGTAAAATTGAATCCGTTC-TGCCAG-TGAA--GCCAATCAT 1928
BSNT_03299___ 1923 ------GTAA 1926
.|||
BPUM_1946___y 1929 TACATCCTAA 1938
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