Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03288 and BPUM_1943
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:47
# Commandline: needle
# -asequence dna-align/BSNT_03288___pbuX.1.24716.seq
# -bsequence dna-align/BPUM_1943___pbuX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03288___pbuX-BPUM_1943___pbuX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03288___pbuX-BPUM_1943___pbuX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03288___pbuX
# 2: BPUM_1943___pbuX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1368
# Identity: 958/1368 (70.0%)
# Similarity: 958/1368 (70.0%)
# Gaps: 99/1368 ( 7.2%)
# Score: 3202.0
#
#
#=======================================
BSNT_03288___ 1 ATGAG---------AAATGGATTCGGCAAAACGCTGTCTTTAGGGATTCA 41
||||| |||.| || |||||.||.||..||||||||||
BPUM_1943___p 1 ATGAGTGCTGCTAAAAAAG----CG--AAAACACTCTCGCTAGGGATTCA 44
BSNT_03288___ 42 GCATGTTCTCGCCATGTATGCCGGCGCCATTGTCGTTCCTCTGATTGTCG 91
||||||.||.||.||||||||.||.|||.||.|.||.||.||.|||||.|
BPUM_1943___p 45 GCATGTGCTGGCGATGTATGCTGGAGCCGTTCTTGTACCACTCATTGTGG 94
BSNT_03288___ 92 GAAAAGCAATGGGACTGAC-CGTCGAGCAGCTGACTTACTTAGTATCAAT 140
||.|.|||.|.||.||.|| |.| |..|||||||||||||||.|.||...
BPUM_1943___p 95 GAGATGCACTTGGCCTCACACCT-GCACAGCTGACTTACTTAATTTCGGC 143
BSNT_03288___ 141 TGATATTTTTATGTGCGGTGTGGCTACACTTCTGCAAGTGTGGAGCAACC 190
.|||||||||||||||||.|..||.||.|||||.|||.|.||||..||||
BPUM_1943___p 144 AGATATTTTTATGTGCGGGGCTGCCACGCTTCTTCAACTATGGAAAAACC 193
BSNT_03288___ 191 GATTTTTTGGGATCGGGCTTCCGGTAGTGCTTGGATGTACCTTTACAGCT 240
|.||.|||||.|||||..|.||.||.||..|.||||||||.|||||.||.
BPUM_1943___p 194 GTTTCTTTGGTATCGGTTTGCCAGTTGTATTAGGATGTACGTTTACTGCA 243
BSNT_03288___ 241 GTATCGCCAATGATTGCGATTGGATCTGAATATGGGGTTTCAACAGTTTA 290
||.||.||.||||||||||||||.|||.||||.|||.||||..|..|.||
BPUM_1943___p 244 GTTTCTCCTATGATTGCGATTGGTTCTAAATACGGGATTTCGTCTATCTA 293
BSNT_03288___ 291 CGGCAGCATTATCGCTTCAGGCATTCTTGTCATTCTTATTTCATTTTTCT 340
.||.||.|||||||||||.||...|.|..|||||||..||||.|||||||
BPUM_1943___p 294 TGGAAGTATTATCGCTTCGGGGTGTATCATCATTCTGCTTTCCTTTTTCT 343
BSNT_03288___ 341 TTGGAAAGCTCGTATCGTTTTTTCCGCCGGTCGTGACAGGCTCTGTTGTT 390
||||.|||||.||....|||||.||.||.|||||||||||.|||||.||.
BPUM_1943___p 344 TTGGGAAGCTTGTGAAATTTTTCCCACCTGTCGTGACAGGGTCTGTCGTC 393
BSNT_03288___ 391 ACGATTATCGGTATTACACTGATGCCGGTTGCCATGAATAACATGGCCGG 440
||.|||||.||.||.||.||.||.||.||.||.||||||||.|||||.||
BPUM_1943___p 394 ACCATTATTGGGATAACCCTTATTCCAGTAGCGATGAATAATATGGCAGG 443
BSNT_03288___ 441 CGGAGAAGGAAGTGCAGATTTCGGAGATCTCT--CCAACCTTGTTCTTGC 488
.||||||||||||||.||||..| |.|||.| ..||.||.|..||.||
BPUM_1943___p 444 AGGAGAAGGAAGTGCTGATTATG--GTTCTTTTGAAAATCTAGGCCTCGC 491
BSNT_03288___ 489 TTTTACC--GTGTTGAGTATCATTGTACTTCTGTACCGTTTTACAAAAGG 536
||| || |||.||..|||||||||.||.||.||.||.||.||||..||
BPUM_1943___p 492 TTT--CCTTGTGCTGTTTATCATTGTGCTGCTCTATCGATTCACAACTGG 539
BSNT_03288___ 537 CTTTATCAAGTCCGTCTCGATTTTGATCGGTATTTTGATTGGCACCTTCA 586
||||||.|||.|..||.|.||.||.|||||||||.|..||||.||...|.
BPUM_1943___p 540 CTTTATGAAGGCGATCGCCATATTAATCGGTATTCTCCTTGGGACAGCCG 589
BSNT_03288___ 587 TCGCTTATTTTATGGGAAAAGTTCAATTTGATAATGTTTCGGACGCGGCA 636
|.|||...||||||||.|||||..||...|.|.|.||..||.|.|||..|
BPUM_1943___p 590 TTGCTGCATTTATGGGGAAAGTGGAAACAGCTGAGGTGGCGAATGCGCAA 639
BSNT_03288___ 637 GTTGTTCAAATGATTCAGCCATTTTACTTCGGCGCGCCGTCTTTTCA--- 683
|||.|||..||||||.|.||||||||.||.|||..|||..|.|||.|
BPUM_1943___p 640 GTTTTTCGCATGATTGAACCATTTTATTTTGGCATGCCTACCTTTGAATT 689
BSNT_03288___ 684 TGCAGCGCCTATCATTACGATGTCCATCGTTGCAAT--TGTCAGCCTT-G 730
|||| ||.||.||.||||||.|..|.|||||.|| ||||| || |
BPUM_1943___p 690 TGCA---CCGATTATGACGATGACGTTAGTTGCGATTGTGTCA---TTAG 733
BSNT_03288___ 731 TGGAGTCAACTGGTGTTTACTTTGCTTTAGGTGACCTGACAAACCGCCGT 780
|.||.|||||.||||||||.||.||.||||||||..|.|||||||||...
BPUM_1943___p 734 TCGAATCAACAGGTGTTTATTTCGCATTAGGTGATTTAACAAACCGCTCA 783
BSNT_03288___ 781 TTGACAGAGAAAGATTTGTCTAAAGGCTATCGAGCTGAAGGACTGGCTGT 830
||.|..||||||||.||..|.|||||||||||.||.|||||..|.|||||
BPUM_1943___p 784 TTAAATGAGAAAGACTTAGCGAAAGGCTATCGCGCAGAAGGGATTGCTGT 833
BSNT_03288___ 831 GCTTCTGGGAGGTATTTTTAACGCTTTTCCTTACACGGCATTCTCTCAAA 880
|.|..|.||.|||||.|||||.||||||||||||||.||.|.|||.||||
BPUM_1943___p 834 GTTATTAGGTGGTATCTTTAATGCTTTTCCTTACACAGCCTACTCGCAAA 883
BSNT_03288___ 881 ATGTCGGGCTTG-TTCAGCTCACAGGGATCAAAAAAAATACAGTCATTGT 929
|.||.||| ||| |.|||.|.||||||.||||.||||||..||||||.||
BPUM_1943___p 884 ACGTTGGG-TTGATCCAGTTGACAGGGGTCAAGAAAAATCAAGTCATCGT 932
BSNT_03288___ 930 GGTCACAGGTGTGATCCTAATGGCATTTGGGCTGTTTCCAAAGATCGCTG 979
.||.|||||.|...|.||.|||..||||||.||.|||||.||.||.||||
BPUM_1943___p 933 TGTGACAGGCGCATTGCTCATGTTATTTGGACTTTTTCCTAAAATTGCTG 982
BSNT_03288___ 980 CTTTCACGACCATTATTCCATCCGCTGTTTTGGGCGGTGCAATGGTGGCG 1029
|.||.|||||.|||||||||....|.|||.|.|||||.||||||||.||.
BPUM_1943___p 983 CATTTACGACGATTATTCCAAAGTCAGTTCTTGGCGGCGCAATGGTAGCC 1032
BSNT_03288___ 1030 ATGTTTGGAATGGTGATTGCTTACGGAATTAAAATGCTCAGCCGCATTGA 1079
||||||||.|||||.|||||.|||||.||||||||||||...||..|.||
BPUM_1943___p 1033 ATGTTTGGGATGGTCATTGCCTACGGTATTAAAATGCTCTCGCGTGTGGA 1082
BSNT_03288___ 1080 TTTTGCGAAACAGGAAAATCTGCTGATTGTTGCCTGCTCAGTGGGATTGG 1129
||||||.|||||||||||.||.||.||||||||.|||||||||||..|.|
BPUM_1943___p 1083 TTTTGCCAAACAGGAAAACCTACTTATTGTTGCATGCTCAGTGGGGATCG 1132
BSNT_03288___ 1130 GGCTGGGTGTGACCGTTGTGCCGGATATTTTCAAACAGCTTCC-GAGTGC 1178
|..|.|||||.||||||||||||.|.||.||..|.||.||.|| ||.|
BPUM_1943___p 1133 GCTTAGGTGTCACCGTTGTGCCGCAAATGTTTGACCATCTGCCAGAAT-- 1180
BSNT_03288___ 1179 C-------TTAACGCTGCTT-ACAACGAATGGCATTGTGGCGGGCAGCTT 1220
| ||| || ||||..||||||||.|||||.||||||||
BPUM_1943___p 1181 CAATCAAATTA-------TTAACAAGTAATGGCATCGTGGCCGGCAGCTT 1223
BSNT_03288___ 1221 TACTGC-AGTCGTCTTAAATATTGTATATAAC--GTTT--TTTCTAAAGC 1265
|||.|| |.|...||| .|||||.|.|||.|| |.|| |||
BPUM_1943___p 1224 TACCGCTATTTTGCTT-CATATTATTTATCACATGATTCCTTT------- 1265
BSNT_03288___ 1266 TAAAAAATCAGAA------CAAGAAGCTGACCTCGCTGAACAAAAAAC-- 1307
|||||| |||| ||.|| .||||...||.|.|
BPUM_1943___p 1266 TAAAAA---AGAAGGCGGGCAGGA----------TCTGATGGAAGAGCCT 1302
BSNT_03288___ 1308 -AGCAGTC-------TAA 1317
||||.|| |||
BPUM_1943___p 1303 AAGCAATCTGTTATGTAA 1320
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