Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03286 and BPUM_1940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_03286___ypbQ.1.24716.seq
# -bsequence dna-align/BPUM_1940___ypbQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03286___ypbQ-BPUM_1940___ypbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03286___ypbQ-BPUM_1940___ypbQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03286___ypbQ
# 2: BPUM_1940___ypbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 548
# Identity: 343/548 (62.6%)
# Similarity: 343/548 (62.6%)
# Gaps: 79/548 (14.4%)
# Score: 898.0
#
#
#=======================================
BSNT_03286___ 1 ----ATGTTTTGGTTGTTGATCGCCATTC-TCATTGTTCAAAGAGCAGC- 44
.|||||.|.||| |.|||| ..||| ||.||..|| |||.||
BPUM_1940___y 1 ATGATTGTTTGGCTTG-TCATCG-GTTTCTTCGTTTGTC----AGCGGCT 44
BSNT_03286___ 45 ---AGAAATGGCAGTGGCCAGGCAAAACGAACAAAAGGTAAAGAAGCA-- 89
.||||||...||.||||....|||.|||.|.||.|||| |||||
BPUM_1940___y 45 TATTGAAATGCTTGTCGCCAAAAGAAATGAAAAGAAAGTAA--AAGCAAT 92
BSNT_03286___ 90 AGGAGCAATTGAATTTGGCGAGAGCCACTATCCGTATATCATTACGATGC 139
|||.||.|||||||||||.|.|||.||.|||||.|||||..|..|.||||
BPUM_1940___y 93 AGGTGCCATTGAATTTGGTGCGAGTCATTATCCTTATATGGTCGCAATGC 142
BSNT_03286___ 140 ATATC--CTTTTTTTCCTGTC-CTTA-ATTGCCGAGGTGCTGCTGATGAA 185
||| | |||||||| ||.|| |||| |.|| |||.|...|||..|..|
BPUM_1940___y 143 ATA-CGGCTTTTTTT-CTCTCACTTATAGTG--GAGATAAAGCTTTTACA 188
BSNT_03286___ 186 TAAACAGCCGTCCAGC----TGGTGGCTCGGTATCGCTGCAGTTATTT-- 229
|||| .|||||.| |..|..|| .||||.|||.| |||
BPUM_1940___y 189 TAAA----GGTCCATCACAGTATTTTCT-TGTATTGCTCC-----TTTTC 228
BSNT_03286___ 230 --------TAAGCGCACAGATCGTACGGTATTGGGCGCTTTGTTCCTTAG 271
|| ||||.|||.|.|||||.|||||..|.||.|||.|||
BPUM_1940___y 229 CTGATGGCTA----CACAAATCATTCGGTACTGGGCATTGTGCTCCCTAG 274
BSNT_03286___ 272 GGGCATATTGGAATACGAAAATCCTTGTTGTTCCAGGTGTAGAGCTTGTA 321
||.|.||.||||||||.||.||..|.||.||.|||..||.|..|.||||.
BPUM_1940___y 275 GGACGTACTGGAATACAAAGATTTTAGTCGTGCCAAATGCAATGATTGTT 324
BSNT_03286___ 322 AAAAAAGGTCCATATAAATGGATGAAACATCCAAACTATGCCGTTGTTAT 371
||||||||.||.|||...|||.||||||||||.|||||||..||.||...
BPUM_1940___y 325 AAAAAAGGGCCGTATCGTTGGTTGAAACATCCTAACTATGTAGTCGTGGC 374
BSNT_03286___ 372 ACTCGAAATTTTGTTGATTCCGCTGCTTTATCAAGCATACGTCA---CCA 418
..|.||..||||.||.||.|||.|..|.|.|.|.||.||.|||| |||
BPUM_1940___y 375 GATTGAGCTTTTATTTATCCCGTTATTGTTTGATGCGTATGTCACTGCCA 424
BSNT_03286___ 419 TGTGTCTGTTTTCCAT-TTTCAATGCAGTG-----TTGTTAAGCGTCAGA 462
| |.|| |||.||| |||.|||||| || |.||| ||..||
BPUM_1940___y 425 T---TTTG-TTTACATGTTTAAATGCA-TGGATGATGGTT----GTACGA 465
BSNT_03286___ 463 ATTCGCGCAGAAGACAAAGCATTA---CAGGAATACAGCGTAAAATAG 507
||||...||||.||.||||||||| |||.|.| .|| ||||.||.
BPUM_1940___y 466 ATTCAAACAGAGGAGAAAGCATTAAATCAGTATT--TGC-TAAATTAA 510
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