Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03282 and BPUM_1938

See Amino acid alignment / Visit BSNT_03282 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:45
# Commandline: needle
#    -asequence dna-align/BSNT_03282___ypbS.1.24716.seq
#    -bsequence dna-align/BPUM_1938___ypbS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03282___ypbS-BPUM_1938___ypbS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03282___ypbS-BPUM_1938___ypbS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03282___ypbS
# 2: BPUM_1938___ypbS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 286
# Identity:     176/286 (61.5%)
# Similarity:   176/286 (61.5%)
# Gaps:          50/286 (17.5%)
# Score: 425.0
# 
#
#=======================================

BSNT_03282___      1 ATGTCAGAG-GTACATAAAGCAATTTCAGCACATTCATCAAAA-CAGCAC     48
                     |||.| ||| |||||..|||..||.||.|||||.||| ||||| |||||.
BPUM_1938___y      1 ATGAC-GAGCGTACACGAAGAGATCTCCGCACACTCA-CAAAAGCAGCAT     48

BSNT_03282___     49 GAGCATATCAAAGCATTT-ATGCGTCTTGAAAATATGCGTGAATTGGCGA     97
                     |..||||||.|..|.||| .||.| ||||||.|.|...|.|||...||.|
BPUM_1938___y     49 GCTCATATCCAGTCTTTTCTTGAG-CTTGAACAGAAAAGAGAACAAGCAA     97

BSNT_03282___     98 TTGAAGAAGTTGTTGCT------AAAT----GCAGAAACGATGAGCCTTA    137
                     |.| |||     |.|||      ||||    ||| ||||   |||||.|.
BPUM_1938___y     98 TAG-AGA-----TGGCTGTATTCAAATGTGAGCA-AAAC---GAGCCATT    137

BSNT_03282___    138 TACTACAGATGCAATTAATGAAATTAC--CGAGCAAATGAATCAGCTCGC    185
                     |||.|||||.|..||.||.|..|||||  |||  |.||||||.||||.||
BPUM_1938___y    138 TACAACAGACGAGATCAACGCCATTACGTCGA--AGATGAATGAGCTTGC    185

BSNT_03282___    186 TAAAAAAGGC---ATCGTCCCGACAAGACG---GCTTGTATCAAAAGAAA    229
                        |..||||   ||.||.|   ||...||   ||||||..|.||.||.|
BPUM_1938___y    186 ---ACGAGGCGGTATTGTTC---CATTGCGTAAGCTTGTGACGAATGATA    229

BSNT_03282___    230 TGGTCAGAGAATA-------CGTAAGCCGCATGTAA    258
                     |||||||.||.||       ||.||.|.| |.||||
BPUM_1938___y    230 TGGTCAGGGAGTATGTCGAGCGGAAACAG-AAGTAA    264


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