Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03280 and BPUM_1937
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:45
# Commandline: needle
# -asequence dna-align/BSNT_03280___ypcP.1.24716.seq
# -bsequence dna-align/BPUM_1937___ypcP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03280___ypcP-BPUM_1937___ypcP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03280___ypcP-BPUM_1937___ypcP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03280___ypcP
# 2: BPUM_1937___ypcP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 946
# Identity: 636/946 (67.2%)
# Similarity: 636/946 (67.2%)
# Gaps: 113/946 (11.9%)
# Score: 2071.5
#
#
#=======================================
BSNT_03280___ 1 ATGAATAATAATAAAC-TATTGCTGGTTGACGGCATGGCTCTTTTATTCC 49
||||.||| |.|| ||.||||.||.||.||.|||||.|||||.|||.
BPUM_1937___y 1 ATGAGTAA----ACACGTACTGCTTGTAGATGGAATGGCGCTTTTGTTCA 46
BSNT_03280___ 50 GGGCCTTTTTTGCCACGGCCGTACATCGCAACTTTATGATAAATGACAGC 99
|..|.||||.||||||||||||.||||||||.|||||||||||||||..|
BPUM_1937___y 47 GATCGTTTTATGCCACGGCCGTCCATCGCAATTTTATGATAAATGACCAC 96
BSNT_03280___ 100 GGGGTGCCGACGAACGGCGTCAACGGCTTTTTAAAGCATTTGATT-ACAG 148
||.||||||||.||.||.||.||.||||.|||.||.||.|| ||| ||||
BPUM_1937___y 97 GGTGTGCCGACAAATGGAGTGAATGGCTATTTGAAACACTT-ATTAACAG 145
BSNT_03280___ 149 CTGTGGAAACATTCCAGCCGACACACGTCGTCTGCTGCTGGGACATGGGG 198
||||..|||||||..||||.||.||..|.||..||||||||||.||||||
BPUM_1937___y 146 CTGTACAAACATTTGAGCCAACTCATATTGTGAGCTGCTGGGATATGGGG 195
BSNT_03280___ 199 AGCAAAACGTACCGAAATGACTTGTTCCAAGATTATAAGGCCAACCGCAG 248
||..||||.||.|||||.||.|||||.|||||||||||.||.||.||..|
BPUM_1937___y 196 AGTCAAACCTATCGAAACGAATTGTTTCAAGATTATAAAGCAAATCGTGG 245
BSNT_03280___ 249 CGCGCCGCCTGTGGAGCTGATTCCGCAGTTTGATTTGGCAAAGGAAGCAG 298
.|.|.|||||||.|||||.||||||||.||.|||||.|||||.|||||..
BPUM_1937___y 246 AGAGGCGCCTGTCGAGCTCATTCCGCAATTCGATTTAGCAAAAGAAGCTA 295
BSNT_03280___ 299 CCGCAGAGCTTGGAATCATGAATATTGGCTTTGCCGGCTATGAAGCGGAT 348
|.|.|||.||.|||||..||||.|||||.||....||||.||||||.|||
BPUM_1937___y 296 CAGAAGAACTAGGAATTGTGAACATTGGTTTAAAGGGCTTTGAAGCAGAT 345
BSNT_03280___ 349 GACTGTATCGGTACTCTTGC--CGATTTATTTGC--GAATGAAGCGGAC- 393
||.||.||.||||||||||| ||.|||| | .||.||||| ||
BPUM_1937___y 346 GATTGCATTGGTACTCTTGCTGCGCTTTA----CCAAAAAGAAGC--ACG 389
BSNT_03280___ 394 -ATTACGGTCGTAACAGGGGACAGAGATTTACTTCAGCTGTTAACGGATA 442
.|.||.|||.||||.||.||||.|||.|||||.||..|.||.|..||..
BPUM_1937___y 390 TGTGACTGTCCTAACTGGTGACAAAGACTTACTGCAAATTTTGAATGAAC 439
BSNT_03280___ 443 AAGTAAGCGTTGCTTTGCTTCAAAAAGGAATCGGAAATTATAAAGTCTAT 492
||||.|..|||||.|||.|.|||||||||||.||.||||||||....|||
BPUM_1937___y 440 AAGTGACTGTTGCCTTGATGCAAAAAGGAATTGGCAATTATAAGCATTAT 489
BSNT_03280___ 493 ACAAAAGAGACTTTTTATGAAGAAACAGGCGTAATG---------CCGAA 533
||||||| |.||.|.|||||| .|.|||| |||||
BPUM_1937___y 490 ACAAAAG---CCTTATTTGAAGA------GGAAATGGGAATCTCACCGAA 530
BSNT_03280___ 534 GGCTTTGATTGATATTAAAGCGCTTATGGGAGATTCCAGTGATAACTATC 583
|||..|.||||||||.|||||.||.|||||.|||.|.||||||||.||||
BPUM_1937___y 531 GGCACTCATTGATATGAAAGCACTCATGGGTGATGCAAGTGATAATTATC 580
BSNT_03280___ 584 CCGGAGTCAAAGGGATTGGAGAAAAAACAGCCTACAAACTGATTCGTGAA 633
|.||.||||||||.||.|||||||||||.||.|..|||.|.|||| ||
BPUM_1937___y 581 CAGGTGTCAAAGGAATCGGAGAAAAAACGGCTTTGAAATTTATTC---AA 627
BSNT_03280___ 634 ---TACGAAACGATTGACCGTTTATTGGAAAATCTTTCTCTTCTTCCAAA 680
||..|||||||||||.||||.||.|||||| .||||.|
BPUM_1937___y 628 ACCTATAAAACGATTGACGGTTTGTTAGAAAAT----------GTCCATA 667
BSNT_03280___ 681 A----------GGACAGCAGGGAAAAATTC-AGCAAGGTTTAAG-CGATT 718
| |.||||||....|||||.| ||||.|||| || .||||
BPUM_1937___y 668 AACTAACGGCTGCACAGCAAAAGAAAATGCAAGCAGGGTT--AGAAGATT 715
BSNT_03280___ 719 TGGAGATGTCGAGGAAGCTT-----GCGGAAATTCATTGCTCA-GTGCCG 762
||.||.|.||..| || ||.||.||..|.|| |.| ||.|||
BPUM_1937___y 716 TGCAGCTTTCTCG-----TTTATTGGCAGAGATCAAATG-TGATGTCCCG 759
BSNT_03280___ 763 CTGGCCTGCACACTGAAAGACGCTTTATTTACTTTGCAAATG-------- 804
||...||||.||.|..|.||.|| |.|||||
BPUM_1937___y 760 CTCAGCTGCCCAATTGATGAAGC------------GAAAATGAACATCAA 797
BSNT_03280___ 805 ----GAGCAGGCGGCTGACATGCTTCGCCGCCACCAAATCAAAGGAATTG 850
||.|..||.||||..|||||..|.|..||.||||||||||||||.|
BPUM_1937___y 798 TCAAGAACGTGCTGCTGCTATGCTAAGGCATCATCAAATCAAAGGAATCG 847
BSNT_03280___ 851 AGCGTATGCTTGAAAAGCTGAACGCT-AGAGAGATCGTTTAG---- 891
|.|..||| .||||..|||.||...| ||||||||| ||
BPUM_1937___y 848 AACCGATG-ATGAACCGCTTAAATATAAGAGAGATC----AGCTAA 888
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