Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03277 and BPUM_1935

See Amino acid alignment / Visit BSNT_03277 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:45
# Commandline: needle
#    -asequence dna-align/BSNT_03277___ypdQ.1.24716.seq
#    -bsequence dna-align/BPUM_1935___rnhA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03277___ypdQ-BPUM_1935___rnhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03277___ypdQ-BPUM_1935___rnhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03277___ypdQ
# 2: BPUM_1935___rnhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 423
# Identity:     276/423 (65.2%)
# Similarity:   276/423 (65.2%)
# Gaps:          51/423 (12.1%)
# Score: 838.0
# 
#
#=======================================

BSNT_03277___      1 ATGCCTACAGAAATATACGTAGACGGCGCAAGCGCTGGTAATCCCGGCCC     50
                     .||||..|.|||||||||.|.||.||.|||||.||.||.|||||.||.||
BPUM_1935___r      1 TTGCCAGCTGAAATATACATTGATGGTGCAAGTGCAGGGAATCCAGGTCC     50

BSNT_03277___     51 TTCCGGTATCGGCATTTTTATCAAACATGAGGGAATAGCAGAATCCTTCT    100
                     |||.||.|||||||||||.||||||.||.|.||||..||.||||||||.|
BPUM_1935___r     51 TTCTGGCATCGGCATTTTCATCAAATATAATGGAAAGGCTGAATCCTTTT    100

BSNT_03277___    101 CTATTCCAATCGGAGTGCAT-ACAAATCAGGAAGCGGAATTTCTTGCATT    149
                     |.|||||..|.|| ||.||| |..|||||.|||||.||||||..|||..|
BPUM_1935___r    101 CCATTCCTCTAGG-GTCCATGAGCAATCACGAAGCAGAATTTTCTGCTCT    149

BSNT_03277___    150 AATTGAAGGGATGAAGCTATGTGC-------AACGCGCGGGTATCAATCG    192
                     .||.|||||||||||  .||.|||       ||.|...|.|||     |.
BPUM_1935___r    150 GATCGAAGGGATGAA--AATCTGCGTGGAAAAAGGATTGCGTA-----CC    192

BSNT_03277___    193 GTTTCCTTTCGAACCGATTCAGATATTGTGGAACGCGCCACTGAGCTTGA    242
                     |||||.|||||.||.||||||.|..|.||.||.|||||     |||   .
BPUM_1935___r    193 GTTTCATTTCGCACAGATTCACAAGTAGTTGACCGCGC-----AGC---C    234

BSNT_03277___    243 AATG--------GTTAAAAATAAAACGTTTCAACCGTTCGTAGAAGAAAT    284
                     ||||        |.|||||||..|.|.|||||.|..||..|..||||.||
BPUM_1935___r    235 AATGCAGGATTTGCTAAAAATCCAGCATTTCAGCATTTTATTAAAGAGAT    284

BSNT_03277___    285 CACCCGA--TTAAAAGC------GGCATTCCCTCTTTTTTTCATCAAATG    326
                     .| .|||  ||.|||||      |  |||     |.|||||.||.|||||
BPUM_1935___r    285 GA-TCGAGCTTCAAAGCAATTTTG--ATT-----TATTTTTTATTAAATG    326

BSNT_03277___    327 GATACCGGGCAAGCAAAACCAAAAAGCCGATCTTCTGGCAAAAGAAGCGA    376
                     |||.|||.|.|||.||||.|||..|||.||||..||.||.|.|.||||||
BPUM_1935___r    327 GATTCCGAGTAAGGAAAATCAAGTAGCAGATCAGCTCGCTAGAAAAGCGA    376

BSNT_03277___    377 TTCGGCTGAATGAAAAGAATTAA    399
                     |||..||  .|..||||.||.| 
BPUM_1935___r    377 TTCACCT--TTCTAAAGGATGA-    396


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