Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03274 and BPUM_1933
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:45
# Commandline: needle
# -asequence dna-align/BSNT_03274___ypeP.1.24716.seq
# -bsequence dna-align/BPUM_1933___ypeP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03274___ypeP-BPUM_1933___ypeP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03274___ypeP-BPUM_1933___ypeP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03274___ypeP
# 2: BPUM_1933___ypeP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 749
# Identity: 455/749 (60.7%)
# Similarity: 455/749 (60.7%)
# Gaps: 145/749 (19.4%)
# Score: 1169.5
#
#
#=======================================
BSNT_03274___ 1 ATGAAGCTCAGACCGCATTTGAAAATAGAAGCAAAAG-GAACAGGATCCG 49
|||||..|.|||.|.||.|..|.||| .|||| |||...|||..|
BPUM_1933___y 1 ATGAAATTAAGAGCACACTACACAAT------GAAAGTGAAATCGATTGG 44
BSNT_03274___ 50 TCTCAT---TTTTTAGC--GAAGACTGGCTGACAGC--ACAGCAGGC--- 89
...||| ||||||.| |||||.|||.|| .||| |.|| ||||
BPUM_1933___y 45 GGCCATTGCTTTTTATCAAGAAGATTGGTTG-GAGCTAAAAG-AGGCCCT 92
BSNT_03274___ 90 -ACGTTTGCTCGCCAGAGAACTTGGACGTTTTCCAT--ACATGAAAGA-- 134
|.|||.|| |.|||.| || |||..|||||
BPUM_1933___y 93 AAGGTTAGC-------AAAACAT-----------ATCGACAAAAAAGAAC 124
BSNT_03274___ 135 ----------GCTAGAGTTCGAAGACGAGAAAGGCGGCAGCTGGATGCTG 174
.|||...||.|||||.||.|||||.|.||..|||....|.
BPUM_1933___y 125 CCCAGTCACTTCTATCATTTGAAGATGAAAAAGGGGCCATGTGGTCTATA 174
BSNT_03274___ 175 AAGGAATTGGAAAAGCTGACAGAGG------AGCTTGCTCAAGAGCCTGA 218
||.||..|.||||||||.|..||.| ||||| ||.||.||
BPUM_1933___y 175 AAAGAGCTTGAAAAGCTAAATGAAGAATTAAAGCTT------GAACCGGA 218
BSNT_03274___ 219 TGACATTACTGTTTATTTTGACGGCAGTTTCGATAAGGAGA---GCGAAC 265
|||..||...||.||||||||.|..|||||..||||.||.| ||| ||
BPUM_1933___y 219 TGAGCTTCAAGTCTATTTTGATGCAAGTTTTCATAAAGAAACAGGCG-AC 267
BSNT_03274___ 266 TGGCCGGTCTCGGGATCGTCATCTATTAT----TCATTGGGAGGA----A 307
| |.|||||.||..|.|||.||||.||| | |||| |
BPUM_1933___y 268 T--CTGGTCTTGGTGTTGTCGTCTACTATAAGCT-------AGGAAAAGA 308
BSNT_03274___ 308 CCCGGC--ATCGCTTGAGAAAAAATAAAAGC--TTCC--GGCTGAAAACC 351
| || ||||.|||||.|||||| .||| |||| || ||..||.
BPUM_1933___y 309 C---GCTTATCGATTGAGGAAAAAT--CAGCCTTTCCAAGG--GAGCACT 351
BSNT_03274___ 352 AATAATGAAGCTGAATACGCAGCGCTTTA--TGAAGCAATAAGAGAAGTA 399
|||||||||||.||.||.|| .|||||| |||.|||.|||.|....||
BPUM_1933___y 352 AATAATGAAGCAGAGTATGC--GGCTTTATTTGAGGCAGTAAAAACTTTA 399
BSNT_03274___ 400 AGAGAGCTTGGGGCAAGCAGAAATTCAATTACAATCAAAGGGGACTCGCT 449
|.|||.||.||.||||||||||||||..|.||.||.|.|||.||.||.||
BPUM_1933___y 400 AAAGACCTAGGAGCAAGCAGAAATTCTGTCACGATTAGAGGAGATTCACT 449
BSNT_03274___ 450 TGTCGTGCTGAATCAGCTTGACGGCAG-CTGGCCTTGTTATGATCCATCT 498
|||.||..|||||||| ||.|..|.|| .||||||||||||||| .||.|
BPUM_1933___y 450 TGTTGTCATGAATCAG-TTAAAAGGAGAATGGCCTTGTTATGAT-GATGT 497
BSNT_03274___ 499 -CATAATGAATGGCTGGACAAAATAGAAGC--ACTCCTTGAATCGCTGAA 545
|||||..|||||||.|||..|||.||||| ||| |..||..||||||
BPUM_1933___y 498 ACATAACAAATGGCTAGACCGAATTGAAGCGGACT--TAAAAGAGCTGAA 545
BSNT_03274___ 546 GCTTACTCCAACCTACGAAACAATACAACGAAAAGACAAT-CAGGAAGCT 594
|||.||.||||||||.|||.|.||..|.||.|||.|.||| || |||||.
BPUM_1933___y 546 GCTGACGCCAACCTATGAAGCCATCGATCGGAAACAAAATGCA-GAAGCG 594
BSNT_03274___ 595 GA-CGGCCTCGCTAAAAAAATTCT-------ATCCC-ATCAATTCGTAGA 635
|| |.| ||.||.|.|.|..|||| .|||| ||| ||
BPUM_1933___y 595 GATCAG-CTTGCAAGACAGGTTCTTGCAGACGTCCCAATC--------GA 635
BSNT_03274___ 636 AAGCCACA-CGAAATTAGA--CCGTAACGGAGATGACGATATTGGATAA 681
||| .||| .||||||||| |.| ||||||.||| ||||
BPUM_1933___y 636 AAG-TACATTGAAATTAGAAGCAG--ACGGAGCTGA---------ATAA 672
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