Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03266 and BPUM_1925

See Amino acid alignment / Visit BSNT_03266 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:45
# Commandline: needle
#    -asequence dna-align/BSNT_03266___bsaA.1.24716.seq
#    -bsequence dna-align/BPUM_1925___bsaA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03266___bsaA-BPUM_1925___bsaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03266___bsaA-BPUM_1925___bsaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03266___bsaA
# 2: BPUM_1925___bsaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 494
# Identity:     339/494 (68.6%)
# Similarity:   339/494 (68.6%)
# Gaps:          22/494 ( 4.5%)
# Score: 1057.0
# 
#
#=======================================

BSNT_03266___      1 ATGTCTATTTATCATATGAAGGT-ACGTACAATCACAGGGAAAGACATGA     49
                     |||||.||.|||.||||..|||| |.| ||.||.|..||..||||.|...
BPUM_1925___b      1 ATGTCAATATATGATATTCAGGTCAAG-ACCATTAACGGTCAAGAAAAAT     49

BSNT_03266___     50 CACT-TCAGCCTTTCGCGGGAAAGGTACTGATGATCGTGAATACAGCAAG     98
                     ||.| .||| .||.|...|||||.||.||.||.||.||.||.||||||||
BPUM_1925___b     50 CAATGGCAG-ATTACAAAGGAAAAGTCCTCATTATTGTTAACACAGCAAG     98

BSNT_03266___     99 TAAGTGCGGTTTTACTCCCCAATTAAAGCAGCTGCAGGAATTATATGATA    148
                     .||.||.||..|.|||||.|||||.||.||.|||||.|||.||||||||.
BPUM_1925___b     99 CAAATGTGGACTAACTCCTCAATTTAAACAACTGCAAGAACTATATGATC    148

BSNT_03266___    149 CATATCAGCAGGAGGGGCTGGAGATCTTAGGGTTTCCCTGCAATCAATTC    198
                     .||||||..|..||||.||.||.||.|||||.|||||.||.||.|||||.
BPUM_1925___b    149 AATATCATGAAAAGGGCCTTGAAATTTTAGGATTTCCATGTAACCAATTT    198

BSNT_03266___    199 ATGAACCAAGAGCCTGATGAAGAGGCTGACATACAGGAATTTTG-----T    243
                     ||||||||||||||.||.|.|||.|..|.|||.||.|||||.||     |
BPUM_1925___b    199 ATGAACCAAGAGCCAGAAGGAGAAGAAGCCATTCAAGAATTCTGTTCTTT    248

BSNT_03266___    244 GAAACAAATTACGGTGTTACATTTCCTATGTTTTCAAAAGTGGATGTAAA    293
                     |     |||||.||.||.||.||.|||||||||.|.|||||.|||||.||
BPUM_1925___b    249 G-----AATTATGGGGTGACCTTCCCTATGTTTGCGAAAGTAGATGTTAA    293

BSNT_03266___    294 CGGGAAAAATGCCCACCCGCTGTTTGTGTATTTGACAGAACATGCGAAAG    343
                     .||..|.|||||.||||||||.||.....||||.|||...|||||.||||
BPUM_1925___b    294 TGGTGACAATGCGCACCCGCTTTTCAAACATTTAACAAGTCATGCAAAAG    343

BSNT_03266___    344 GGATGCTGGGAACTAAGGCGATCAAGTGGAATTTCACGAAATTTATAGTG    393
                     |..|.||.||.||.||..|..|.||.|||||||||||.||||||||.|||
BPUM_1925___b    344 GTGTACTTGGGACGAAAACAGTGAAATGGAATTTCACAAAATTTATCGTG    393

BSNT_03266___    394 GATAGAAATGGAGAAATCGTTGGCCGTTATTCACCAAATACAAATCCGAA    443
                     |||..|||.||||||.||..||..||.|..||.||.||.|||...||.||
BPUM_1925___b    394 GATCAAAACGGAGAAGTCACTGAGCGCTTCTCTCCGAAAACATCACCAAA    443

BSNT_03266___    444 AGAGCTGGAAA--ACGAT-ATCG-TGAAGCTATTAGAGCAATAA    483
                     |||..|.||||  .|.|| |||| |    ||.||.||..|||||
BPUM_1925___b    444 AGAATTAGAAAGCTCCATCATCGCT----CTTTTGGACAAATAA    483


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