Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03264 and BPUM_1924

See Amino acid alignment / Visit BSNT_03264 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:45
# Commandline: needle
#    -asequence dna-align/BSNT_03264___ypgQ.1.24716.seq
#    -bsequence dna-align/BPUM_1924___ypgQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03264___ypgQ-BPUM_1924___ypgQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03264___ypgQ-BPUM_1924___ypgQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03264___ypgQ
# 2: BPUM_1924___ypgQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 709
# Identity:     386/709 (54.4%)
# Similarity:   386/709 (54.4%)
# Gaps:         188/709 (26.5%)
# Score: 794.0
# 
#
#=======================================

BSNT_03264___      1 ATGAAGGAATTGAA------GCAGGCAG-AGCAAATCAGGACATGGGTTC     43
                     |||.||.||   ||      |.|||||| .||  .||    |.|.|.|||
BPUM_1924___y      1 ATGCAGAAA---AAACAATTGGAGGCAGCTGC--CTC----CTTTGTTTC     41

BSNT_03264___     44 -AATCTATCCTGACTGA---------CGAAAGCTCTGGACATGACT--GG     81
                      .|||      |.||||         |||     |||||||.|| |  ||
BPUM_1924___y     42 GGATC------GGCTGAAATATGAACCGA-----CTGGACACGA-TGCGG     79

BSNT_03264___     82 CATCATGT--ATCAAGAGTAGCAGATCTTG-------CAGCGTATATTGG    122
                     | ||||.|  |||..|.|..||||  ||||       ||        |||
BPUM_1924___y     80 C-TCATATTGATCGCGTGCGGCAG--CTTGCCTGCCACA--------TGG    118

BSNT_03264___    123 AGAA-AAGGAAAAAGCGG------ATTTGTTCATTG-TTGAAACGGCGGC    164
                     ..|| .|||  ||.||||      .||||     || ||||||.|||.||
BPUM_1924___y    119 CTAATCAGG--AAGGCGGCTCCCAGTTTG-----TGATTGAAATGGCAGC    161

BSNT_03264___    165 TTTGGTTCATGATTTAATTGATGTGAAGCTGCC---TGACACGGTCAGGC    211
                     ..|.|||||||||.|.|||||||..||||||.|   ||| |.||  |||.
BPUM_1924___y    162 GATTGTTCATGATGTTATTGATGAAAAGCTGTCGAGTGA-ATGG--AGGA    208

BSNT_03264___    212 TTTCTGTGAGCGAAGTA--TATGA---TCAGCTCGTTTTTTTCGGAGT--    254
                     ||||    |.|.|||.|  | |||   |||||||.|||.||..|.|||  
BPUM_1924___y    209 TTTC----ACCAAAGCAGCT-TGAGCTTCAGCTCCTTTCTTGGGAAGTTC    253

BSNT_03264___    255 -----AGGAAAAGATAATGCTGACAGGGTGAT-TCAT----ATTATAACA    294
                          .||    ||||.|        .||.|| ||||    ||.||.|||
BPUM_1924___y    254 ATACGCGG----GATATT--------CGTTATATCATGGACATCATTACA    291

BSNT_03264___    295 AGGATGTCCTTTCG----GGACAGGGGGA-AATTGGCGAAGGAGCCGCTC    339
                     |.||||||.|||||    .||||...|.| |||.|.|.||        |.
BPUM_1924___y    292 ACGATGTCTTTTCGTCATCGACATAAGCAGAATAGACCAA--------TA    333

BSNT_03264___    340 TCAATTGAAGGAAAAGCC---GTACAGGATGCTGACAGACTTGATGCGAT    386
                     ||..|.|||||   .|||   ||.||.||.||.||..|.||.||||||||
BPUM_1924___y    334 TCGTTAGAAGG---GGCCATTGTTCAAGACGCAGATCGGCTCGATGCGAT    380

BSNT_03264___    387 TGGTGCTGTCGGCATTGCGAGAGCTTTCATGTTTGCGGGCGCAAAAGGGC    436
                     .||.||...|||.||||||||.|..||.|..|.|||.||||||||||||.
BPUM_1924___y    381 AGGAGCAACCGGTATTGCGAGGGTGTTTACTTATGCAGGCGCAAAAGGGG    430

BSNT_03264___    437 ATGGCCTTT-----ATGGAGATG-AGCAAAGCGCC-TACGCT----CATT    475
                     |...||..|     |.|||.|.| ||||..||.|| |  |||    ||| 
BPUM_1924___y    431 AACCCCACTACACAAAGGACACGCAGCAGGGCTCCGT--GCTAAAGCAT-    477

BSNT_03264___    476 TTTTTCAT-------AAGCTGTTGCGGC----TGAAAGATATGATGAATA    514
                           ||       ||||||.|    |    |.|||||..|.|||||||
BPUM_1924___y    478 ------ATGGAAGAAAAGCTGCT----CAAATTAAAAGACTTAATGAATA    517

BSNT_03264___    515 CAGACACTGCACGGGAACTGGCAGAAGAAAGACACAATTTTATGCTTCAG    564
                     |.....|||.|..|.|.||.||.||.||..|.||..||||.|||...|.|
BPUM_1924___y    518 CTCGTTCTGGAAAGCAGCTTGCTGAGGAGCGGCATGATTTGATGAGCCTG    567

BSNT_03264___    565 TTTGTC-CGCCAATTAGAAA-AAGAAATACCCGGGATT---GATGCCAAA    609
                     |||.|| .|.||  |.|||| ||||   |..|||..||   ||||     
BPUM_1924___y    568 TTTATCAAGACA--TGGAAAGAAGA---ATGCGGCCTTACAGATG-----    607

BSNT_03264___    610 ACGTCGTAA    618
                      .||.|   
BPUM_1924___y    608 -AGTAG---    612


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