Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03264 and BPUM_1924
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:45
# Commandline: needle
# -asequence dna-align/BSNT_03264___ypgQ.1.24716.seq
# -bsequence dna-align/BPUM_1924___ypgQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03264___ypgQ-BPUM_1924___ypgQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03264___ypgQ-BPUM_1924___ypgQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03264___ypgQ
# 2: BPUM_1924___ypgQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 709
# Identity: 386/709 (54.4%)
# Similarity: 386/709 (54.4%)
# Gaps: 188/709 (26.5%)
# Score: 794.0
#
#
#=======================================
BSNT_03264___ 1 ATGAAGGAATTGAA------GCAGGCAG-AGCAAATCAGGACATGGGTTC 43
|||.||.|| || |.|||||| .|| .|| |.|.|.|||
BPUM_1924___y 1 ATGCAGAAA---AAACAATTGGAGGCAGCTGC--CTC----CTTTGTTTC 41
BSNT_03264___ 44 -AATCTATCCTGACTGA---------CGAAAGCTCTGGACATGACT--GG 81
.||| |.|||| ||| |||||||.|| | ||
BPUM_1924___y 42 GGATC------GGCTGAAATATGAACCGA-----CTGGACACGA-TGCGG 79
BSNT_03264___ 82 CATCATGT--ATCAAGAGTAGCAGATCTTG-------CAGCGTATATTGG 122
| ||||.| |||..|.|..|||| |||| || |||
BPUM_1924___y 80 C-TCATATTGATCGCGTGCGGCAG--CTTGCCTGCCACA--------TGG 118
BSNT_03264___ 123 AGAA-AAGGAAAAAGCGG------ATTTGTTCATTG-TTGAAACGGCGGC 164
..|| .||| ||.|||| .|||| || ||||||.|||.||
BPUM_1924___y 119 CTAATCAGG--AAGGCGGCTCCCAGTTTG-----TGATTGAAATGGCAGC 161
BSNT_03264___ 165 TTTGGTTCATGATTTAATTGATGTGAAGCTGCC---TGACACGGTCAGGC 211
..|.|||||||||.|.|||||||..||||||.| ||| |.|| |||.
BPUM_1924___y 162 GATTGTTCATGATGTTATTGATGAAAAGCTGTCGAGTGA-ATGG--AGGA 208
BSNT_03264___ 212 TTTCTGTGAGCGAAGTA--TATGA---TCAGCTCGTTTTTTTCGGAGT-- 254
|||| |.|.|||.| | ||| |||||||.|||.||..|.|||
BPUM_1924___y 209 TTTC----ACCAAAGCAGCT-TGAGCTTCAGCTCCTTTCTTGGGAAGTTC 253
BSNT_03264___ 255 -----AGGAAAAGATAATGCTGACAGGGTGAT-TCAT----ATTATAACA 294
.|| ||||.| .||.|| |||| ||.||.|||
BPUM_1924___y 254 ATACGCGG----GATATT--------CGTTATATCATGGACATCATTACA 291
BSNT_03264___ 295 AGGATGTCCTTTCG----GGACAGGGGGA-AATTGGCGAAGGAGCCGCTC 339
|.||||||.||||| .||||...|.| |||.|.|.|| |.
BPUM_1924___y 292 ACGATGTCTTTTCGTCATCGACATAAGCAGAATAGACCAA--------TA 333
BSNT_03264___ 340 TCAATTGAAGGAAAAGCC---GTACAGGATGCTGACAGACTTGATGCGAT 386
||..|.||||| .||| ||.||.||.||.||..|.||.||||||||
BPUM_1924___y 334 TCGTTAGAAGG---GGCCATTGTTCAAGACGCAGATCGGCTCGATGCGAT 380
BSNT_03264___ 387 TGGTGCTGTCGGCATTGCGAGAGCTTTCATGTTTGCGGGCGCAAAAGGGC 436
.||.||...|||.||||||||.|..||.|..|.|||.||||||||||||.
BPUM_1924___y 381 AGGAGCAACCGGTATTGCGAGGGTGTTTACTTATGCAGGCGCAAAAGGGG 430
BSNT_03264___ 437 ATGGCCTTT-----ATGGAGATG-AGCAAAGCGCC-TACGCT----CATT 475
|...||..| |.|||.|.| ||||..||.|| | ||| |||
BPUM_1924___y 431 AACCCCACTACACAAAGGACACGCAGCAGGGCTCCGT--GCTAAAGCAT- 477
BSNT_03264___ 476 TTTTTCAT-------AAGCTGTTGCGGC----TGAAAGATATGATGAATA 514
|| ||||||.| | |.|||||..|.|||||||
BPUM_1924___y 478 ------ATGGAAGAAAAGCTGCT----CAAATTAAAAGACTTAATGAATA 517
BSNT_03264___ 515 CAGACACTGCACGGGAACTGGCAGAAGAAAGACACAATTTTATGCTTCAG 564
|.....|||.|..|.|.||.||.||.||..|.||..||||.|||...|.|
BPUM_1924___y 518 CTCGTTCTGGAAAGCAGCTTGCTGAGGAGCGGCATGATTTGATGAGCCTG 567
BSNT_03264___ 565 TTTGTC-CGCCAATTAGAAA-AAGAAATACCCGGGATT---GATGCCAAA 609
|||.|| .|.|| |.|||| |||| |..|||..|| ||||
BPUM_1924___y 568 TTTATCAAGACA--TGGAAAGAAGA---ATGCGGCCTTACAGATG----- 607
BSNT_03264___ 610 ACGTCGTAA 618
.||.|
BPUM_1924___y 608 -AGTAG--- 612
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