Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03256 and BPUM_1920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:44
# Commandline: needle
# -asequence dna-align/BSNT_03256.1.24716.seq
# -bsequence dna-align/BPUM_1920___ypiP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03256-BPUM_1920___ypiP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03256-BPUM_1920___ypiP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03256
# 2: BPUM_1920___ypiP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 854
# Identity: 529/854 (61.9%)
# Similarity: 529/854 (61.9%)
# Gaps: 145/854 (17.0%)
# Score: 1474.5
#
#
#=======================================
BSNT_03256 1 ATG---ATAACAACAAGCTATAGACCGTCTGAACACACCATAAAAACTGC 47
||| ||.||.|||||||.||||.||..||||||.||.||..||||.||
BPUM_1920___y 1 ATGCTCATTACTACAAGCTTTAGAGCGAATGAACAAACGATTGAAACAGC 50
BSNT_03256 48 -AAAGCAGCTTTCTAAAGAGCTAAATATGCCATACTGCGGACG--GAA-- 92
||.||| |||.|..||||..|| |||..||.|.|.| |||
BPUM_1920___y 51 GAAGGCA-CTTGCAGAAGATTTA-------CATGGTGAGTATGTAGAAAG 92
BSNT_03256 93 ---TAAACAAACGGTTGAACACCTGTTGAAGTCAGCTGA----ACGTGAT 135
.||||||.|.||..|.||.|| |..||||| |.|.|||
BPUM_1920___y 93 ACGCAAACAATCTGTCAAGCAGCT-------TGCGCTGAAACGAGGAGAT 135
BSNT_03256 136 TTGCTAGTGGTCGGCAAAGAGCGGTTTGAGCTGTATACGAAACAAGGTGC 185
.|.||.||.|||||.|||||..|||||||...||||..|..|.|.||||.
BPUM_1920___y 136 GTCCTTGTTGTCGGAAAAGAAAGGTTTGAATGGTATCAGCCAAATGGTGA 185
BSNT_03256 186 CAAATTCTTTTTTCATCCAAATACAGCGATGTTCAGAGCCAAACGCTTCT 235
.||.|||||.||||||||||...|||||||||||||.|..||.||..|||
BPUM_1920___y 186 AAAGTTCTTCTTTCATCCAAGCTCAGCGATGTTCAGGGTGAAGCGGCTCT 235
BSNT_03256 236 TACAGGGAGAGCAAGAGCCTATGCTTCGGGCTGC-CGGCTTATCTGA--- 281
|.|..|.|||..|.||.|||.|..||...||.|| |.|||.| |
BPUM_1920___y 236 TGCGCGAAGAAAAGGATCCTTTAATTGAAGCAGCACAGCTAA----AGCC 281
BSNT_03256 282 AGGGGATGCGTTTTTAGATTGCACACTCGGGCTGGGGTCAGATGCCATTA 331
|||.|||.|.|||||||||||||||||.||..|.||.||.|||||.||.|
BPUM_1920___y 282 AGGCGATTCCTTTTTAGATTGCACACTTGGCTTAGGATCTGATGCGATGA 331
BSNT_03256 332 TCGCAAGTATGGCAGTAGGC--GAAACGG---GTTCTGTTGTTGGGATTG 376
..|||||..|.||||||||| |||| || |.|| ||.|||||||
BPUM_1920___y 332 CTGCAAGCTTTGCAGTAGGCAGGAAA-GGAAAGATC----GTCGGGATTG 376
BSNT_03256 377 AAAAAAACCATCTTGTGTC------TGTTTTAGTGAGGATGGGGCTGCAT 420
||||.||.|.|.||..|.| ||| |.|||.| ||.|||.||
BPUM_1920___y 377 AAAAGAATCCTATTACGGCATTACTTGT----GCGAGAA--GGACTGAAT 420
BSNT_03256 421 TCATGGGAAACGGGTATAGAAGAGCTTCAAGCTGCGATGAGAAGAATCCA 470
.|.|||||.|||||.|||||.| |||| |||.|||
BPUM_1920___y 421 ACGTGGGAGACGGGGATAGAGG------AAGC-------AGATGAA---- 453
BSNT_03256 471 GGTGAAGAATGGTGATTGC--TTA-----GAATAC---ATCAAGCAGCT- 509
|.||.|||..| ||||.| ||| |.|.|| |||.|||||||
BPUM_1920___y 454 -GCGATGAAACG-GATTTCTGTTATCAGCGGAGACAGTATCGAGCAGCTA 501
BSNT_03256 510 --------TCCTGACAACTCTGTTGATGTGGTTTATTTCGATCCAATGTT 551
|||||||...||..|||||||.||.|||||.||.||||||||
BPUM_1920___y 502 AAGAAGTATCCTGACGGTTCATTTGATGTCGTCTATTTTGACCCAATGTT 551
BSNT_03256 552 TCATGAACC---TGTAGAGACCTCTGAC-GGCATCGCGCCTTTACGTGAT 597
|.|.|||.| |..||| .||| || .|.||.|||||..|||||.||
BPUM_1920___y 552 TGAGGAAACGATTCAAGA---ATCT-ACAAGTATAGCGCCGCTACGTCAT 597
BSNT_03256 598 TTGGCAGAGGATTCCG-TTTTG--CACGAAGGATGTATCAATGAAGCGGT 644
...||||||.| || .|||| ||.||||.|..|.|...|||||||.|
BPUM_1920___y 598 GCAGCAGAGCA---CGACTTTGATCATGAAGCAGCTGTGCTTGAAGCGTT 644
BSNT_03256 645 ACGAGTCGCCAGAAAAAGCGTTGTGCTAAAAGACCACTGGAAAAGCCCGC 694
..|.||.||.||||||||.||.|||.||||||||||.|||||||||.|.|
BPUM_1920___y 645 GAGGGTGGCAAGAAAAAGAGTGGTGTTAAAAGACCATTGGAAAAGCACAC 694
BSNT_03256 695 GATTTGAA------------CAGTTTGGTTTTAACGTCATGAAAAGAAAA 732
|||||.|| || .|||.|.|||||.|||.|||||
BPUM_1920___y 695 GATTTAAAGCGGACTCTTACCA------ATTTCAGGTCATCAAACGAAAA 738
BSNT_03256 733 ACAGCACTGTTCCATTATGGCGTCAT-TC-------AAACAAGCCCGTGA 774
|||||.|..||.|||||||| || || || |||.|||||| |.|
BPUM_1920___y 739 ACAGCCCAATTTCATTATGG-GT-ATATCGAGAAAGAAAAAAGCCC-TTA 785
BSNT_03256 774 ---- 774
BPUM_1920___y 786 CTAA 789
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