Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03255 and BPUM_1918
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:44
# Commandline: needle
# -asequence dna-align/BSNT_03255___ypjP.1.24716.seq
# -bsequence dna-align/BPUM_1918___ypjP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03255___ypjP-BPUM_1918___ypjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03255___ypjP-BPUM_1918___ypjP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03255___ypjP
# 2: BPUM_1918___ypjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity: 437/653 (66.9%)
# Similarity: 437/653 (66.9%)
# Gaps: 82/653 (12.6%)
# Score: 1354.5
#
#
#=======================================
BSNT_03255___ 1 ------TTGTGGATGAGAAAGACCCTTGTGGTTTTATTTACCATTGTAAC 44
.|||||||||||||.||.|||||.|...|.|||||.||||.|||
BPUM_1918___y 1 ATGAAGATGTGGATGAGAAAAACGCTTGTTGCGCTCTTTACAATTGCAAC 50
BSNT_03255___ 45 GTTCGGGCTCGTATCTCCTCCGGCTGCCCTTATGGCGGACAAGCCTTCCG 94
.||.||..|.||.|||||||||.|.||..|.|||.|.|||||||
BPUM_1918___y 51 TTTTGGTTTGGTTTCTCCTCCGTCGGCTTTGATGACAGACAAGC------ 94
BSNT_03255___ 95 GACAGCCGAGCAGTCTTGAGCAGAATGA------TTACACCGCTTTTTAT 138
||.|.||.|..||||.|.|.| ||.| |||.||.||..|||||
BPUM_1918___y 95 --CATCTGAACTTTCTTCACCTG-ATAAAACGCCTTATACAGCGGTTTAT 141
BSNT_03255___ 139 G----ATGAGCATGACCTGTACGATGATGAG-----TCGGATGA--CAGG 177
| ||.|| ||||..|| ||..|.||.| |||.|.|| ||.|
BPUM_1918___y 142 GATTCATCAG-ATGAATTG--CGCAGCTGGGAACGATCGCAAGAGGCAAG 188
BSNT_03255___ 178 CG----------AGATCCTGAACTGCTTT-TTCAATCGTACAAGGAACAG 216
|| |||.|| |||| ..||| ||.||||||.||
BPUM_1918___y 189 CGAAGAGCAGGTAGACCC-------CTTTGAGCAA---TATAAGGAAGAG 228
BSNT_03255___ 217 CTCCT-TGACAGCGCTGAGGATCAGTCCTTTTTAAAATTCGGCAGCAGAA 265
.|.|| |.| ||.||.||..||||.||||||.|.||||||||..|.|.||
BPUM_1918___y 229 GTTCTATCA-AGTGCAGAAAATCAATCCTTTCTCAAATTCGGACGTAAAA 277
BSNT_03255___ 266 TCGCTCCTGTCATTGAGGATGACTATCGGA-AAGAGATCCTGCCAAAAAT 314
||.|.|||||||||||.||.||.|| |.|| |||||||.|..||.|||||
BPUM_1918___y 278 TCACACCTGTCATTGAAGACGAGTA-CAGAGAAGAGATTCAACCGAAAAT 326
BSNT_03255___ 315 CGAAAAAGTGATT-AGTGATTATTTAGCGACATTGC-AAGATGATGAGGC 362
.|||.|||| ||| |..|||..||||.| |.|||.| |||||||.||...
BPUM_1918___y 327 TGAACAAGT-ATTAACCGATGTTTTAAC-AAATTTCAAAGATGACGAAAA 374
BSNT_03255___ 363 GTACCAAGATGTTGTGAT-----CTCAAGCATGCCTTC-AGCGGGCAAAA 406
.|..||||||||||||.| .||| |||||| ||||| |||
BPUM_1918___y 375 ATTTCAAGATGTTGTGTTAACTGATCA-----GCCTTCAAGCGG---AAA 416
BSNT_03255___ 407 CG--GAAAAAAT-TTTCAACGTTTACAATCGGACAACTGGAGAAGATCTT 453
.| |||||||| |||| ||.|.|||||.||||..||||||||||||.|.
BPUM_1918___y 417 TGGTGAAAAAATCTTTC-ACATCTACAACCGGAAGACTGGAGAAGATTTG 465
BSNT_03255___ 454 CTCAGATTCCATGTGCGAAGAGACCACCCGCCTCATGACGGCTACTGGTT 503
|||.|.|||||||||.|||||||.||.|||||.||...|||.||.|||||
BPUM_1918___y 466 CTCCGTTTCCATGTGAGAAGAGATCAGCCGCCACACAGCGGATATTGGTT 515
BSNT_03255___ 504 TAATTTTCATTATCATACAGCAGAAGATGGATTTCAATCACATCATGAGC 553
|||.|||||.||.||||||||||||||||||||.||..|.||||||||.|
BPUM_1918___y 516 TAACTTTCACTACCATACAGCAGAAGATGGATTCCAGACGCATCATGAAC 565
BSNT_03255___ 554 TTGGGAGTATTTACTGGGACCGCAACACGCCTCCCAACTGGATGAGTGCC 603
|.||.|.|||||||||||||...|||||.||.||.|.|||||||||...|
BPUM_1918___y 566 TCGGTAATATTTACTGGGACAAAAACACCCCGCCGAGCTGGATGAGCCAC 615
BSNT_03255___ 604 TAA 606
||.
BPUM_1918___y 616 TAG 618
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