Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03254 and BPUM_1917

See Amino acid alignment / Visit BSNT_03254 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:44
# Commandline: needle
#    -asequence dna-align/BSNT_03254___ypjQ.1.24716.seq
#    -bsequence dna-align/BPUM_1917.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03254___ypjQ-BPUM_1917.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03254___ypjQ-BPUM_1917.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03254___ypjQ
# 2: BPUM_1917
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 564
# Identity:     396/564 (70.2%)
# Similarity:   396/564 (70.2%)
# Gaps:          54/564 ( 9.6%)
# Score: 1432.5
# 
#
#=======================================

BSNT_03254___      1 ------------ATGAAAAAGTACACAATGAATGAAATGGTCGATATAAC     38
                                 .||||||||||.||||||||.||||||||..|.||.||
BPUM_1917          1 ATGTCATGCCAATTGAAAAAGTATACAATGAACGAAATGGTGCAGATTAC     50

BSNT_03254___     39 AAAGGATATGCTGAACAAACGGGGCGTTATGATAGAAGATATTGCACGGA     88
                     |||..|.|||.|.|||.||||.||.||.|..||.|||||||||||||..|
BPUM_1917         51 AAAACAAATGTTAAACGAACGTGGAGTGAAAATTGAAGATATTGCACACA    100

BSNT_03254___     89 TTGTTCAAAAACTTCAGGAAAAATACAATCCAAATCTGCCGCTCAGTGTT    138
                     ||||.|.|||.|||||.||||||||..|||||||.||.||.||.|||||.
BPUM_1917        101 TTGTGCTAAAGCTTCAAGAAAAATATCATCCAAACCTTCCACTTAGTGTC    150

BSNT_03254___    139 TGCATGGAGAATGTAGAAAAAGTCCTGAACAAACGTGAAATTATTCATGC    188
                     ||.||.||.|||||.||.|||||..||||.|||.|.||||||.|.|||||
BPUM_1917        151 TGTATTGAAAATGTTGAGAAAGTGTTGAATAAAAGGGAAATTGTCCATGC    200

BSNT_03254___    189 TGTTTTGACAGGCCTTGCACTCGATCAGCTTGCAGAACAGAAGTTTCTCC    238
                     .|||||.|||||.|||||.||.||||||||.||.|||.|.|||.|..|.|
BPUM_1917        201 GGTTTTAACAGGACTTGCCCTTGATCAGCTGGCTGAAAAAAAGCTATTGC    250

BSNT_03254___    239 CCGAACCGCTGCAGCACCTTGTTGAAACGGATGAACCGCTTTACGGCATA    288
                     |.|||||..||||||||.|.||||||||.|||||.||||||||.||.||.
BPUM_1917        251 CAGAACCTTTGCAGCACTTAGTTGAAACAGATGAGCCGCTTTATGGAATT    300

BSNT_03254___    289 GATGAAATTATCCCGCTTTCCATCGTTAATGTGTACGGGTCGATCGGTTT    338
                     |||||.|||||.|||||||||||.||.|||||.||.||.||.||||||||
BPUM_1917        301 GATGAGATTATTCCGCTTTCCATTGTCAATGTATATGGATCAATCGGTTT    350

BSNT_03254___    339 GACCAATTTCGGTTATTTGGATAAAGAGAAGATT-GGAATTATTAAGGAA    387
                     ||||||.|||||||||||.||||||||||| ||| ||.|||||.|..|||
BPUM_1917        351 GACCAACTTCGGTTATTTAGATAAAGAGAA-ATTCGGTATTATCAGAGAA    399

BSNT_03254___    388 CTTGATGAAAGTCCAGAC--GGT---ATTCACACCTTTTTGGATGATATT    432
                     .|.||||||.|||  |.|  |||   .|.||.|||||..|.|||||..||
BPUM_1917        400 TTAGATGAAGGTC--GCCCTGGTGAAGTGCATACCTTCCTTGATGACCTT    447

BSNT_03254___    433 GTGGCAGCTCTTGCTGCAGCAGCGGCGAGCAGAATTGCACATACGCATCA    482
                     ||.||.||.|||||.||||||||.||.||..|.|||||.||..|.||.||
BPUM_1917        448 GTCGCTGCGCTTGCCGCAGCAGCAGCTAGTCGTATTGCTCACTCACACCA    497

BSNT_03254___    483 GGATCTGCAAGATGAA-GAAAAAGAACAGGATGAAAAGCCTGTCGTCAGC    531
                     .|||       ||.|| ||..||||.|||||              ||.|.
BPUM_1917        498 AGAT-------ATTAAGGACGAAGAGCAGGA--------------TCGGG    526

BSNT_03254___    532 TGA-----------    534
                     |||           
BPUM_1917        527 TGAATCAAGTATAA    540


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