Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02921 and BPUM_1916
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_02921___thyA.1.24716.seq
# -bsequence dna-align/BPUM_1916___thyA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02921___thyA-BPUM_1916___thyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02921___thyA-BPUM_1916___thyA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02921___thyA
# 2: BPUM_1916___thyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 954
# Identity: 499/954 (52.3%)
# Similarity: 499/954 (52.3%)
# Gaps: 273/954 (28.6%)
# Score: 969.0
#
#
#=======================================
BSNT_02921___ 1 ATGACGCAATTCGAT-AAACAATACAATTCAATTATAAAGGATATTAT-C 48
|| ||||||||||| |.|| |||| |
BPUM_1916___t 1 -------------ATGAAACAATACAA---------AGAG----TTATGC 24
BSNT_02921___ 49 AATAATGGAATCTCAG-ACGAAGAGTTTGATGTAAGAACCAAGTGGGACT 97
..|.|| |.||..||| ||| ..||||.|| ||| |.||
BPUM_1916___t 25 CGTCAT-GTATTACAGCACG------GGGATGAAA-----AAG-GTGA-- 59
BSNT_02921___ 98 CAGA--TGGAACACCGGCACATACTCTAAGTGTAATGAGTAAGCAAATGA 145
|||| .|||||| ||||||..|...|.|| |..||.|.||.||||
BPUM_1916___t 60 CAGAACGGGAACA--GGCACAATCAGCACGT----TCGGTTACCAGATGA 103
BSNT_02921___ 146 GATTCGACAACT---CAG--AGG--TTCCGATTTTAACGACAAA-AAAGG 187
||||.|| | ||| ||| ||||..|||||||.||||| |||
BPUM_1916___t 104 GATTTGA----TTTGCAGGAAGGATTTCCACTTTTAACAACAAAGAAA-- 147
BSNT_02921___ 188 TTG--CCTGGAAAACAGCCATTAAAGAGTTGCTCTGGATTTGGCAGCTGA 235
||| ||| ||||.||...|||.|.||||||||.|||.||| |.|
BPUM_1916___t 148 TTGCACCT-GAAATCAATTATTCATGAGTTGCTTTGGTTTT------TAA 190
BSNT_02921___ 236 AATCTAAT---GATGTTAATGAT---TTAAACAAGATGGGCGTACATATT 279
||..|.|| .||||.|| || ||.|..||.|| ||.||.|.|||.
BPUM_1916___t 191 AAGGTGATACAAATGTCAA--ATACCTTCAGGAAAAT-GGTGTCCGTATA 237
BSNT_02921___ 280 TGGGATCAGTGGAAACAAGAAGACGGC--ACCATCGGACATGCATATGGA 327
|||.||.|.|||..|.|.|||.|.||| || |.||.|.||..||.|||
BPUM_1916___t 238 TGGAATGAATGGGCAGATGAAAATGGCGAAC--TAGGCCGTGTGTACGGA 285
BSNT_02921___ 328 TTTCAGCTGGGGAAGAAAAACAGAAGTCT-----------AAACGGAGAA 366
...||| |||.|| ||| |.||||.||.
BPUM_1916___t 286 GCGCAG-TGGCGA-------------TCTTGGGCTAGTGGAGACGGTGAG 321
BSNT_02921___ 367 AAAGTGGATCAGGT-----AGACT-ATCTTCTTCATCAAT-TGAAGAACA 409
|..|||||||||.| || || ||| || |.|| |..||.|.|
BPUM_1916___t 322 ACTGTGGATCAGATCACAAAG-CTGATC-----CA-CGATATCGAGCATA 364
BSNT_02921___ 410 ACCCGTCTTCACGCAGACATATT--ACAATGCTGTGGAATCCTGATGATT 457
|.||...||||.|.|||| ||.| .||..||| |||||.||.|.|||..
BPUM_1916___t 365 ATCCCAATTCAAGAAGAC-TAATCGTCAGCGCT-TGGAACCCGGGTGAAA 412
BSNT_02921___ 458 TAGACGCAATGTCCTTAACGCCATG--------TGTATACGAGACACAAT 499
|.||...||||.|..|..|.||||| |||.| ||||
BPUM_1916___t 413 TTGATCAAATGGCGCTGCCACCATGTCATTGTCTGTTT--------CAAT 454
BSNT_02921___ 500 GGTACG--TTAAACATGGGAAA-----CT--CCACCTTGAGGTAAGAGCA 540
..|||| |.|||| ||||| || |||.|||.|...||||.|
BPUM_1916___t 455 TTTACGTATCAAAC---GGAAAGCTTTCTTGCCAGCTTTATCAAAGATC- 500
BSNT_02921___ 541 CGGAGCAATGATATGGCATTAGG-----------AAATCCCTTCA-ATG- 577
.||| |||||....||||| |.||..||||| |||
BPUM_1916___t 501 ---GGCA--GATATCTTTTTAGGTGTTCCATTTAATATTGCTTCATATGC 545
BSNT_02921___ 578 TATTCCAGTACAATGTGTTGCAGCGCATGATTGCTCAAGTGACTGGTTAT 627
|.||| .|||.||| ||||||||..||||.||...|..|
BPUM_1916___t 546 TCTTC--TTACGATG-----------ATGATTGCCAAAGTCACAAATCTT 582
BSNT_02921___ 628 GAGCTTGGTGAATATATCTTTAACATTGGGGATTGC-CATGTGTA-CACA 675
||||..||.||.|.|.|...||...|.||||| ||| |||.|.|| ||.|
BPUM_1916___t 583 GAGCCAGGAGAGTTTGTTCATACGCTAGGGGA-TGCTCATATTTATCAGA 631
BSNT_02921___ 676 CGTCATAT-----AGACAATTTGAAAATTCAAATGGAAAGAGAACAGTTT 720
.||||.| || .||||.||.|||.| |.||..|
BPUM_1916___t 632 -ATCATCTTCCTCAG-----GTGAACATGCAACT---------AGAGCGT 666
BSNT_02921___ 721 GAAGCACCTG---------AACTATGGATCA----ATCCTGAAGTGAA-A 756
||.|.||.|| |.||..|.|||| | ||.||||| |
BPUM_1916___t 667 GAGGAACGTGCGCTTCCGCAGCTTCGCATCACAAGA----GATGTGAAGA 712
BSNT_02921___ 757 G-ATTTTT-ATAACTTTACCATTGATGATTT--------CAAGTTA---- 792
| |||||| || ||.||..|.|||||||| .||.|||
BPUM_1916___t 713 GCATTTTTGAT---TTCACGTTCGATGATTTTGTACTTGAAAATTATGAT 759
BSNT_02921___ 793 ----ATC--AACTATAAACATGGGGACAAGCTTTTATTTGAGGTAGCGGT 836
||| .||..|||| |||.|||....|.|.|||
BPUM_1916___t 760 CCGCATCCGCACATTAAA-----GGAGAAGTCAGTGTATGA--------- 795
BSNT_02921___ 837 TTAA 840
BPUM_1916___t 795 ---- 795
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