Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03251 and BPUM_1914
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:44
# Commandline: needle
# -asequence dna-align/BSNT_03251___ypkP.1.24716.seq
# -bsequence dna-align/BPUM_1914___ypkP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03251___ypkP-BPUM_1914___ypkP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03251___ypkP-BPUM_1914___ypkP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03251___ypkP
# 2: BPUM_1914___ypkP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 739
# Identity: 383/739 (51.8%)
# Similarity: 383/739 (51.8%)
# Gaps: 233/739 (31.5%)
# Score: 798.5
#
#
#=======================================
BSNT_03251___ 1 TTGGTTCGCTACAGCCTTCTGGT-------GGTTTATATTG-TGTATATG 42
|||.||||.|| .|||| |.|||||.||| |||||.|
BPUM_1914___y 1 TTGTTTCGTTA-------TTGGTTTTTAACGATTTATGTTGTTGTATCT- 42
BSNT_03251___ 43 CTGTTAAAAAATATGAAACAATT--AT-----TTAATCAAACAATGCTCG 85
.|.||.||||.|||||..||.|| || |.|||.|| || |
BPUM_1914___y 43 TTTTTTAAAAGTATGAGGCATTTGCATGCCCATGAATTAA------CT-G 85
BSNT_03251___ 86 ATCCCCGTCTATCATACAAAAAACAGATGACTCTTGTGTACGAACAGCC- 134
||||.||..|.||.||.|..||||..|||..|||..|..|.||.||..|
BPUM_1914___y 86 ATCCGCGCATTTCCTATACGAAACGAATGCATCTCATACATGAGCATGCG 135
BSNT_03251___ 135 -AAAGGCGTTTTTG---GAAGGCTGTATCGGCAT--ATCCGGTTCAGTTG 178
||||| |||| | |||||||||.| || .||.||.|||||..
BPUM_1914___y 136 AAAAGG----TTTGCCCG-AGGCTGTATTG--ATCAGTCAGGATCAGTCA 178
BSNT_03251___ 179 TGACGATCCATCAGCCAGAGCCAA--TACCACACGGTCCTGTTTTGTATG 226
||||.||.||.||||.|.|| || |.||..|.|..||||||.|.|||
BPUM_1914___y 179 TGACCATTCACCAGCAAAAG--AAGCTGCCGGATGAGCCTGTTATTTAT- 225
BSNT_03251___ 227 TGCATCCCCGTTTGCATTTGGCTGAACTG--------------GCC---- 258
|||.| ||| .|||||| |.|
BPUM_1914___y 226 ---ATCAC-----GCA------AGAACTGAATCCAGTTACGATGACATTA 261
BSNT_03251___ 259 TTAATTGCTGGATATATTGAGGAACCGGCCG----GCTTT-ATCGCCAAC 303
||||| |||..||.||||..|||| ||||| ||.||.||.
BPUM_1914___y 262 TTAAT---TGGCCATCTTGAAAAACC-----ATTTGCTTTCATGGCAAAG 303
BSNT_03251___ 304 CCAAAAGTGTTCCGCTTGCC--TTTTATCGGGCAATGGCTGGATCGGATG 351
||.||..|.||.||.|..|| ||||| ...|||||||||.|...||||
BPUM_1914___y 304 CCGAATCTTTTTCGATATCCCATTTTA--AAACAATGGCTGAAAAAGATG 351
BSNT_03251___ 352 GATGTGATTTCAGACGGTGATT---CAGAAAAGGT--ATATGAAGATG-- 394
| ||||.||| ||||| | ||.|||.||||
BPUM_1914___y 352 G-------------CGGTTATTCGCCAGAA----TCAATCTGACGATGCC 384
BSNT_03251___ 395 ---TGACAAAACAGCTGGA---AAAG----------GGACAAAGCCTG-A 427
|.|.||.| ||| || |||| ||.||.|| || |
BPUM_1914___y 385 TTATTAGAAGA-AGC--GAAGGAAAGAATCTTATCTGGTCAGAG--TGTA 429
BSNT_03251___ 428 TT-CTTTCA-----------CTAGATGG----TTCTATTGATCCTGTAGA 461
|| |||||| |.|.|||| ..|..||| |||.|||
BPUM_1914___y 430 TTGCTTTCAGAAGCACAGCGCCACATGGCAGAGGCACTTG---CTGAAGA 476
BSNT_03251___ 462 ACTTGCGGCCCGCTATCATCTTCCGTTGGTGATGGTGGAAACGAAAGGAA 511
||| |.||..||||.|.||...|.|.|||||.|..||||
BPUM_1914___y 477 --TTG----------TGATTGTCCGGTTGTACCGATTGAAACAAGTGGAA 514
BSNT_03251___ 512 CAGA--------TAACATGCAAAAGGGCTCGTTTTTTAAACGCTTAAAAC 553
|||| |||| ||..|||| ||| |||||
BPUM_1914___y 515 CAGATCGTCTATTAAC-TGGTAAAG---TCG-------------TAAAA- 546
BSNT_03251___ 554 CGGCAGA---CAT----TGAATTGTCCTTTTCA----AAAGCTTATATAC 592
||| ||| |||||..|..|.|||| ||||| ||
BPUM_1914___y 547 ----AGACTGCATCCTGTGAATGTTGATATTCATATTAAAGC------AC 586
BSNT_03251___ 593 CTGCCAATGAAAAACAATTACGTGCATAA---------- 621
|||.| ||||..|.|.||||||..||.||
BPUM_1914___y 587 CTGTC-ATGATGAGCGATTACGCCCAAAAGCGGGCATAG 624
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