Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03248 and BPUM_1912
See
Amino acid alignment /
Visit
BSNT_03248 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:44
# Commandline: needle
# -asequence dna-align/BSNT_03248___yplP.1.24716.seq
# -bsequence dna-align/BPUM_1912___yplP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03248___yplP-BPUM_1912___yplP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03248___yplP-BPUM_1912___yplP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03248___yplP
# 2: BPUM_1912___yplP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1162
# Identity: 601/1162 (51.7%)
# Similarity: 601/1162 (51.7%)
# Gaps: 359/1162 (30.9%)
# Score: 1368.5
#
#
#=======================================
BSNT_03248___ 1 ATGAATAGTGCACCAAAACTCAATACATTTCAACATCTA---ATCGGAGA 47
||| ||| |||| ||.|.||| ||.|||| || |||||
BPUM_1912___y 1 ATG--------ACC---ACTC-ATTCGTTT--ACGTCTATATAT-GGAGA 35
BSNT_03248___ 48 ACATCAAACTTTTCTGGAAGCGAAGCG----AATC-----GCCAAGCAGT 88
.|||||| |||...||||| |.|| ||.|||||.|
BPUM_1912___y 36 GCATCAA---------GAAATAAAGCGTGCCATTCACCTAGCAAAGCAAT 76
BSNT_03248___ 89 TCTCGTTATCGGAGCTTCCTGTCTTAATAACAGGAAAAATCGGAACAGGC 138
||.|...|...||.|..||.|||||.||.||||||.|||||||.||||||
BPUM_1912___y 77 TCACAAAACACGAACAGCCAGTCTTGATCACAGGAGAAATCGGCACAGGC 126
BSNT_03248___ 139 AAAA------------ATCACTTCGCACATGC--------CATACACTTG 168
|||| ||.|..|.||.||||| ||.||.|||
BPUM_1912___y 127 AAAACGCGATTTGCCTATGAAATTGCTCATGCATCGGCTTCAAACGCTT- 175
BSNT_03248___ 169 GAATCTTCGAGAAGCAATGAACCGTTTATGAGCGTCAATTGCAGCACCCA 218
||.|||..|.|.||| |||| .||||
BPUM_1912___y 176 --------------CACTGACACATCTAT--------ATTG----TCCCA 199
BSNT_03248___ 219 TTCGGAAGAAACCCTTTTTCATG-AGCT-TTTTG------GCCCTAACGG 260
|.| |..||| |||| ..||| |||.|.||||
BPUM_1912___y 200 TCC--------------TAGATGAAGCTACGTTGCAGAAAGCCTTCACGG 235
BSNT_03248___ 261 AAACACAGGTGTTTTTCAAAAAGCGGT-ACGAGGAACCCTTTTTCTTGAT 309
| |||||.|.|| | ||..||||.|.|.||.
BPUM_1912___y 236 A----------------AAAAACCCGTCA-----AATTCTTTATTTAGAC 264
BSNT_03248___ 310 GATGTATGGCGCATGCCTGCTTCTGTA---CA----AGC-TCAGCT---- 347
||..| |||||..||..||| || ||| ||||.|
BPUM_1912___y 265 GAAAT--------TGCCTCATTAAGTATTCCAATGCAGCATCAGGTCATT 306
BSNT_03248___ 348 -GTTAAAAGCGCTTGATTC-AGACACGGAGAAACCGCGAATGATCTGTGC 395
||| ||| ||| ||| |.|
BPUM_1912___y 307 CGTT------------TTCTAGA---------------AAT------TTC 323
BSNT_03248___ 396 TTCTGCAGAC--CGATCCGTGGAAC---------ATACATTCAGGCA--- 431
|.||||| || ..|||..||..|| ||..||..|||||
BPUM_1912___y 324 TCCTGCA-ACAAAAATCATTGCCACTTCGTCTTTATCAATAGAGGCATTG 372
BSNT_03248___ 432 AG----------ACTTATTCTACAGACTGAAC-ATTTTAACGCTCA---- 466
|| ||.| ||.||| |||||| .|||||.||||.|
BPUM_1912___y 373 AGGGTTTCATCTACCT-TTTTAC---CTGAACTGTTTTATCGCTTAAATG 418
BSNT_03248___ 467 ------------CACTGCCCGAATTATCGGAACGAAAAAGCGATATTCCG 504
|..||||...||||.|.||.|||||||..||.|||||.
BPUM_1912___y 419 TTTTCCATTTGCCTTTGCCGTCATTAGCAGATCGAAAAACAGACATTCCT 468
BSNT_03248___ 505 CTTTTGAC-ACAGCATTTTCTCTCAAATTCCGG---TCAGCA-------- 542
.|.||.|| ||.|| ||||| |||.|| |.||||
BPUM_1912___y 469 GTGTTAACAACTGC--TTTCT------TTCAGGAGCTGAGCATGACACCT 510
BSNT_03248___ 543 -ATTCTTAATCGATCCCTCCGTTTTTCCCGTG----CTTG-AGAAGCATG 586
|| ||.|||||....|||| |.| |||| ||.||.||.
BPUM_1912___y 511 GAT-----ATTGATCCAAGTGTTT-----GGGAAACCTTGCAGGAGTATC 550
BSNT_03248___ 587 CATTTGAAGGCAATGTCAGGGAATTAAAAAA---CGCTGCAGATTATATG 633
|.||||||||.||.|||..||||.|.||||| || |.|| ||||
BPUM_1912___y 551 CGTTTGAAGGAAACGTCCAGGAACTTAAAAATATCG-TTCA----ATAT- 594
BSNT_03248___ 634 GCGGCAG----TATCAAGCGGGGGAACG--ATT----CAGCCATATGACC 673
||.|||| |.||.|| |||..|||| ||| ||.| |||
BPUM_1912___y 595 GCTGCAGTCATTCTCGAG-GGGCAAACGGTATTTTTACACC------ACC 637
BSNT_03248___ 674 TGCCGCC------GTATA--------TT----AGAGGCGCGATAGACAGA 705
||||||| || || || ||||| ||.|..||
BPUM_1912___y 638 TGCCGCCCTTTGTGT-TAACCCCTCTTTCACCAGAGG-----TAAAAGGA 681
BSNT_03248___ 706 AAAACGTCGAAGAAAAAAGCGAAGCTGCTGACTTTAATGGAAAAAGC-TG 754
||||.| |||||| .|.|.|||.||..|||||| |||||| .|
BPUM_1912___y 682 AAAAAG--GAAGAA-------CACCAGCTCACACTAATGG-AAAAGCAAG 721
BSNT_03248___ 755 AGTTTTTGTTTATTTTGGAAACAATAAAAGTAT-TGAACGAAAAAGGAGA 803
|||||.|.||..|..|.|||.|.||.||| |.| |.||.||.|||||.||
BPUM_1912___y 722 AGTTTGTTTTCCTGCTAGAAGCTATTAAA-TCTCTCAATGAGAAAGGTGA 770
BSNT_03248___ 804 ACCTGCCAGCAGACGGATCATTTCTGAACACAGCAAAAATACCCAAACCT 853
|.||||.|||||.||.|||.|.|||||....||||||.|...|.|.|.|.
BPUM_1912___y 771 AGCTGCTAGCAGGCGCATCTTGTCTGAGTTAAGCAAACAAGGCGACATCC 820
BSNT_03248___ 854 CGTTAACTCCTCAGCAGGTCAGAAGCCGTCTCGACTATTTGGAGAAAAAA 903
||.|.||.|||||||||||.||.|||||..|.||..|..|.|||||||||
BPUM_1912___y 821 CGCTGACCCCTCAGCAGGTGAGGAGCCGATTAGATGACCTTGAGAAAAAA 870
BSNT_03248___ 904 GATTATGTCACCAAAAGCCGCGGACGCGCAGGCACAAAAATTACCTTTGA 953
|..||.||.||.|||.|....||..|.||.||||||||.|||||..||||
BPUM_1912___y 871 GCATACGTGACGAAAGGAAAAGGCAGGGCCGGCACAAAGATTACACTTGA 920
BSNT_03248___ 954 GGG-------------------CTTGAGCTTTATAGAGACGTTAAAAAAT 984
.|| |||||...|||||.|...|||.||.||
BPUM_1912___y 921 AGGTCTGTCATTCCTAAAGTCACTTGATGGTTATATACCGGTTCAATAA- 969
BSNT_03248___ 985 CAAATGATCTAG 996
BPUM_1912___y 969 ------------ 969
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.