Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03241 and BPUM_1906
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_03241___ypmS.1.24716.seq
# -bsequence dna-align/BPUM_1906___ypmS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03241___ypmS-BPUM_1906___ypmS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03241___ypmS-BPUM_1906___ypmS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03241___ypmS
# 2: BPUM_1906___ypmS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 613
# Identity: 388/613 (63.3%)
# Similarity: 388/613 (63.3%)
# Gaps: 95/613 (15.5%)
# Score: 1135.0
#
#
#=======================================
BSNT_03241___ 1 ATGAATAAGTGGAAGCGACTGTTTTTTATATTGCTTGCAATCAAT----- 45
|||||.||||||||..|..|.||||||||.||.||||||||||||
BPUM_1906___y 1 ATGAAAAAGTGGAAAAGCTTATTTTTTATTTTACTTGCAATCAATCTATT 50
BSNT_03241___ 46 -TTTATCCTCGCCGCCGGGTTTGTGGCACTT--GTTTTGCTCCCGGGGGA 92
.||.|.||.||| ||.||.|.|| .|.|||||.|
BPUM_1906___y 51 GATTGTACTTGCC--------TGCGGTATTTTAATGTTGCTGC------- 85
BSNT_03241___ 93 ACAGGCTCAGGTGAA--GGATTCATC--------TG-AGAGCGAGTATGG 131
||||| |||.|| .|.||||.| || |.|||||||||..
BPUM_1906___y 86 -CAGGC---GGTCAATCCGCTTCAACGAAAGAATTGAAAAGCGAGTATTC 131
BSNT_03241___ 132 ATTTCAAGTGACAAGCACAAAAGAA----TCATTAGCTGCGTTTGTTAAC 177
.|||.|..|..|.|||.|||||||| |||.||||| |||
BPUM_1906___y 132 TTTTAATATATCTAGCTCAAAAGAATCACTCACTAGCT-------TTA-- 172
BSNT_03241___ 178 TCA-----TATTTAAACGACAAAGCA----TCAA---ACAAGCTTGATTA 215
||| ||||| ||.|||.|| |||| |.|.||..||.|.
BPUM_1906___y 173 TCAATGATTATTT----GAAAAATCAAGGGTCAAGTGATATGCCAGACTT 218
BSNT_03241___ 216 TAAAGTAGAGATTGATGATGATGTTCATGTCGCAGGGAAAATCAAGGCAT 265
|.|.||.|.|||.|||.|.|||||..|.||..||||....||.||.||.|
BPUM_1906___y 219 TCATGTGGCGATCGATCAAGATGTGAAAGTAACAGGCGCCATTAAAGCTT 268
BSNT_03241___ 266 TTTCCACGTCTATTGATGCGTTTA----TCGCTTTTGAGCCGACTGTGAA 311
|.||..||.|.|||||||| | ||.|.|||..|||.|||||..|
BPUM_1906___y 269 TCTCTTCGACGATTGATGC----AAACGTCTCATTTACGCCAACTGTTGA 314
BSNT_03241___ 312 AAAAAACGGTGATGT-------AGAGCTGAAT-GTCACGAAATTTTCGTT 353
|.|.||.|||||||| |.|| ||.|| ||| ||||..|
BPUM_1906___y 315 AGATAATGGTGATGTGCTTTTGAAAG-TGGATGGTC-------TTTCAAT 356
BSNT_03241___ 354 AGGGAAATTGAGTATACCAATTAGCTTTGTGTTAAATTATAT-GGACAGC 402
.||..||||.||.||.||..||||.|||||..|||..||.|| ||.|||
BPUM_1906___y 357 TGGTCAATTAAGCATTCCGGTTAGTTTTGTTCTAAGCTACATGGGCCAG- 405
BSNT_03241___ 403 TTTTATGAATTGCCGTCATTTGTCCATGTTCACCCCGGA-GAAAAAAGCA 451
||.||||||.||||...|||.||.|||| |.|..||||| .||||||...
BPUM_1906___y 406 TTCTATGAACTGCCAGAATTCGTTCATG-TGAAACCGGATCAAAAAACGG 454
BSNT_03241___ 452 TTGAAGTGCGTTTGTCAGAAATGCCTTTAACGAATGGAATGTATGTCAAA 501
||||||||||..|.|||||||||||..|.|||||||..||||||||.|||
BPUM_1906___y 455 TTGAAGTGCGCCTTTCAGAAATGCCACTGACGAATGATATGTATGTGAAA 504
BSNT_03241___ 502 GCGGATAAGATAAATTTAGAAAAAGATGAAATTGAGTTTTCCTATTACCA 551
|||.|.||.||..||.||||.||.||||||||||||||.||||||||.||
BPUM_1906___y 505 GCGAACAAAATTGATCTAGAGAACGATGAAATTGAGTTCTCCTATTATCA 554
BSNT_03241___ 552 TCCTAAACAATAG 564
|||.||.||||||
BPUM_1906___y 555 TCCAAAGCAATAG 567
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