Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03237 and BPUM_1902

See Amino acid alignment / Visit BSNT_03237 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence dna-align/BSNT_03237___ypoP.1.24716.seq
#    -bsequence dna-align/BPUM_1902.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03237___ypoP-BPUM_1902.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03237___ypoP-BPUM_1902.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03237___ypoP
# 2: BPUM_1902
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 462
# Identity:     294/462 (63.6%)
# Similarity:   294/462 (63.6%)
# Gaps:          66/462 (14.3%)
# Score: 858.5
# 
#
#=======================================

BSNT_03237___      1 TTGAAAGTAAGAACACAGATGATGTACGATATGGAAACTTTACT-----C     45
                     |||.||..|||||.|.|.||||||||.||.|||||.||.|||||     |
BPUM_1902          1 TTGGAACAAAGAAAAAAAATGATGTATGAAATGGATACCTTACTGAGAAC     50

BSNT_03237___     46 CGTAAAGTCTTTAAACAAATACGCAATGAAATCAA-----TGAAATTTTA     90
                     ||||     |||||.||.||.||..||||.||.||     ||     .|.
BPUM_1902         51 CGTA-----TTTAAGCAGATCCGTTATGAGATTAACAGCCTG-----CTC     90

BSNT_03237___     91 GATAAAGAGCTGTCGCGGAATGAATTCACCATTCT---TCGGATCCTCAG    137
                     ||.||.||..|.||.|||||||||||...||||.|   ||   |.||..|
BPUM_1902         91 GAAAACGAATTATCTCGGAATGAATTTCTCATTTTAAATC---TGCTTCG    137

BSNT_03237___    138 TGAACAAGGGCCTAAAAAAGTCACTGAATTTGCGCCTATTTTAGAGGTAT    187
                     |||.||||||.|.||||||||.||.|||||||||.|.|||||||..||.|
BPUM_1902        138 TGAGCAAGGGGCAAAAAAAGTAACGGAATTTGCGTCCATTTTAGGAGTGT    187

BSNT_03237___    188 CGGCAAGCCACATTACGGCTGTGACCGATGCGCTGGTAGAAAAGGAATGG    237
                     |.||||||||.||.||.|||||.|||||..|.||.||||||||||..|||
BPUM_1902        188 CAGCAAGCCATATCACAGCTGTAACCGACACACTTGTAGAAAAGGGCTGG    237

BSNT_03237___    238 ATTACGAGAATCAGATCGAAGGAAGACAGACGCATCATCCGCATTCATAT    287
                     ||.||..|.|||.|.||.||.||.||..|.|||||||||      .|.||
BPUM_1902        238 ATCACCCGTATCCGTTCTAAAGAGGATCGCCGCATCATC------AAAAT    281

BSNT_03237___    288 -CACTGAAGCG----GGCGAA--AAAGTCCTTCAGCACTTTAACGAGAAA    330
                      ||||.||.||    ||..||  |||.|.| |.||||.|||   ||||||
BPUM_1902        282 CCACTTAACCGATAAGGGTAAGGAAATTAC-TGAGCATTTT---GAGAAA    327

BSNT_03237___    331 ---AAAACGGAATATTTCTTTA---AACGCTTTGACTGCTACACT----G    370
                        |||||.|||||   |||||   |.||.|||||.|    ||.|    |
BPUM_1902        328 AAGAAAACAGAATA---CTTTATGGAGCGATTTGAAT----CATTCGACG    370

BSNT_03237___    371 ATGCTGAACTTGCCACGTTAATCGAGCTCTTCAGCAAACTTGATAA----    416
                     |.|..|||||....||..|.|||.|..|.||.|..||.||.|||||    
BPUM_1902        371 ACGAGGAACTAAAAACAATGATCAAATTATTTAAAAAGCTGGATAAAAGT    420

BSNT_03237___    417 -AAAACGGTGA-    426
                      ||||.|.|.| 
BPUM_1902        421 CAAAAGGATTAA    432


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