Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03237 and BPUM_1902
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_03237___ypoP.1.24716.seq
# -bsequence dna-align/BPUM_1902.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03237___ypoP-BPUM_1902.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03237___ypoP-BPUM_1902.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03237___ypoP
# 2: BPUM_1902
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 462
# Identity: 294/462 (63.6%)
# Similarity: 294/462 (63.6%)
# Gaps: 66/462 (14.3%)
# Score: 858.5
#
#
#=======================================
BSNT_03237___ 1 TTGAAAGTAAGAACACAGATGATGTACGATATGGAAACTTTACT-----C 45
|||.||..|||||.|.|.||||||||.||.|||||.||.||||| |
BPUM_1902 1 TTGGAACAAAGAAAAAAAATGATGTATGAAATGGATACCTTACTGAGAAC 50
BSNT_03237___ 46 CGTAAAGTCTTTAAACAAATACGCAATGAAATCAA-----TGAAATTTTA 90
|||| |||||.||.||.||..||||.||.|| || .|.
BPUM_1902 51 CGTA-----TTTAAGCAGATCCGTTATGAGATTAACAGCCTG-----CTC 90
BSNT_03237___ 91 GATAAAGAGCTGTCGCGGAATGAATTCACCATTCT---TCGGATCCTCAG 137
||.||.||..|.||.|||||||||||...||||.| || |.||..|
BPUM_1902 91 GAAAACGAATTATCTCGGAATGAATTTCTCATTTTAAATC---TGCTTCG 137
BSNT_03237___ 138 TGAACAAGGGCCTAAAAAAGTCACTGAATTTGCGCCTATTTTAGAGGTAT 187
|||.||||||.|.||||||||.||.|||||||||.|.|||||||..||.|
BPUM_1902 138 TGAGCAAGGGGCAAAAAAAGTAACGGAATTTGCGTCCATTTTAGGAGTGT 187
BSNT_03237___ 188 CGGCAAGCCACATTACGGCTGTGACCGATGCGCTGGTAGAAAAGGAATGG 237
|.||||||||.||.||.|||||.|||||..|.||.||||||||||..|||
BPUM_1902 188 CAGCAAGCCATATCACAGCTGTAACCGACACACTTGTAGAAAAGGGCTGG 237
BSNT_03237___ 238 ATTACGAGAATCAGATCGAAGGAAGACAGACGCATCATCCGCATTCATAT 287
||.||..|.|||.|.||.||.||.||..|.||||||||| .|.||
BPUM_1902 238 ATCACCCGTATCCGTTCTAAAGAGGATCGCCGCATCATC------AAAAT 281
BSNT_03237___ 288 -CACTGAAGCG----GGCGAA--AAAGTCCTTCAGCACTTTAACGAGAAA 330
||||.||.|| ||..|| |||.|.| |.||||.||| ||||||
BPUM_1902 282 CCACTTAACCGATAAGGGTAAGGAAATTAC-TGAGCATTTT---GAGAAA 327
BSNT_03237___ 331 ---AAAACGGAATATTTCTTTA---AACGCTTTGACTGCTACACT----G 370
|||||.||||| ||||| |.||.|||||.| ||.| |
BPUM_1902 328 AAGAAAACAGAATA---CTTTATGGAGCGATTTGAAT----CATTCGACG 370
BSNT_03237___ 371 ATGCTGAACTTGCCACGTTAATCGAGCTCTTCAGCAAACTTGATAA---- 416
|.|..|||||....||..|.|||.|..|.||.|..||.||.|||||
BPUM_1902 371 ACGAGGAACTAAAAACAATGATCAAATTATTTAAAAAGCTGGATAAAAGT 420
BSNT_03237___ 417 -AAAACGGTGA- 426
||||.|.|.|
BPUM_1902 421 CAAAAGGATTAA 432
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