Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03236 and BPUM_1901

See Amino acid alignment / Visit BSNT_03236 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence dna-align/BSNT_03236___msrA.1.24716.seq
#    -bsequence dna-align/BPUM_1901___msrA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03236___msrA-BPUM_1901___msrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03236___msrA-BPUM_1901___msrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03236___msrA
# 2: BPUM_1901___msrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 553
# Identity:     404/553 (73.1%)
# Similarity:   404/553 (73.1%)
# Gaps:          35/553 ( 6.3%)
# Score: 1462.5
# 
#
#=======================================

BSNT_03236___      1 ATGTCTGAAAAAAAAGAAATCGCCACATTTGCAGGAGGCTGTTTTTGGTG     50
                     ||||||||||||.|||||.|.|||||||||||||||||||||||.|||||
BPUM_1901___m      1 ATGTCTGAAAAACAAGAATTAGCCACATTTGCAGGAGGCTGTTTCTGGTG     50

BSNT_03236___     51 TATGGTTAAACCTTTTGACGAACAGCCGGGAATTGAAAAAGTGGTGTCCG    100
                     |||||||||.||||||||.|||||||||||.|||...|||||.|..||.|
BPUM_1901___m     51 TATGGTTAAGCCTTTTGATGAACAGCCGGGCATTATCAAAGTTGAATCAG    100

BSNT_03236___    101 GGTATACAGGCGGCCATACTGAAAACCCTACGTATGAAGAGGTGTGCAGT    150
                     |||||||.|||||.|||||.|..||.||.||.||||||||.||.||.|..
BPUM_1901___m    101 GGTATACTGGCGGACATACAGTGAATCCGACCTATGAAGAAGTATGTACA    150

BSNT_03236___    151 GAAACGACGGGACATCGTGAAGCCGTTCAAATCACGTTTAATCCTGATGT    200
                     .|.||.|||||||||.|.|||||.||||||||.||||||.||||.|||.|
BPUM_1901___m    151 AATACAACGGGACATAGAGAAGCGGTTCAAATTACGTTTGATCCAGATAT    200

BSNT_03236___    201 ATTCCCTTATGAAAAACTGCTTGAATTATTTTGGCAGCAAATCGATCCGA    250
                     .|||||.||||||||.||..|.|||.|.|.||||||||||||.||.||.|
BPUM_1901___m    201 TTTCCCATATGAAAAGCTATTAGAACTGTATTGGCAGCAAATAGACCCAA    250

BSNT_03236___    251 CAGATGCCGGGGGGCAATTTGCTGATCGCGGCAG-TTCCTATCGCGCAGC    299
                     ||||||..||.||||||||||.||||.|.|| || .|||||.|||.|||.
BPUM_1901___m    251 CAGATGATGGCGGGCAATTTGGTGATAGAGG-AGAGTCCTACCGCACAGG    299

BSNT_03236___    300 CATTTTTTATCATAATGATAAACAAAAGGAGCTTGCGGAAGCTTC-----    344
                     .||.|.|..||||.||||..|.||.|...|||||||.||.||.||     
BPUM_1901___m    300 TATCTATGTTCATCATGACGAGCAGAGAAAGCTTGCAGAGGCATCGAAAG    349

BSNT_03236___    345 -CAAGC--AACGTCTGGCTGAAAGCGGCATCTTTAAAGATCCGATTGTAA    391
                      .||||  |||        ||||||||||||||..||.|.||.|||||||
BPUM_1901___m    350 AGAAGCTGAAC--------GAAAGCGGCATCTTCCAAAAGCCAATTGTAA    391

BSNT_03236___    392 CGGACATTTTAAAAGCTGAACCTTTCTATGAAGCGGAAGGCTACCATCAG    441
                     |.||.||||||.|.||||..|||||.|||...||.||||..||.||||||
BPUM_1901___m    392 CAGAAATTTTAGATGCTGCTCCTTTTTATCCCGCAGAAGAGTATCATCAG    441

BSNT_03236___    442 CATTTTTATAAAAAGAATCCAGCACATTATCAGCGCTACCGGACA----G    487
                     ||.|.|||||||||||||..|..|||||||.|.||.||    .||    |
BPUM_1901___m    442 CACTATTATAAAAAGAATAAAATACATTATGAACGTTA----TCATGTCG    487

BSNT_03236___    488 GTTCCGGACGTGCGGGGTTTATCAGTGAG---CATTGGGGGGCTAAATAA    534
                     ||||.||..|.|||||.|||||   ||||   ||||||.|.|.|||||.|
BPUM_1901___m    488 GTTCTGGCAGAGCGGGTTTTAT---TGAGTCCCATTGGAGTGATAAATCA    534

BSNT_03236___    534 ---    534
                        
BPUM_1901___m    535 TGA    537


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