Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03230 and BPUM_1897
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_03230.1.24716.seq
# -bsequence dna-align/BPUM_1897___cgeB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03230-BPUM_1897___cgeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03230-BPUM_1897___cgeB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03230
# 2: BPUM_1897___cgeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1111
# Identity: 541/1111 (48.7%)
# Similarity: 541/1111 (48.7%)
# Gaps: 401/1111 (36.1%)
# Score: 1146.0
#
#
#=======================================
BSNT_03230 1 ----------------------ATGTCT---GCAGA---TA-CAC----T 17
.||.|| ||.|| || ||| |
BPUM_1897___c 1 ATGAAGCTTCTTTATATCAGCTCTGGCTACGGCGGAATCTATCACATGTT 50
BSNT_03230 18 TGA---------AGCAGAAA----------------CTTT-----GGTGA 37
||| ||.|||.| |||| .||.|
BPUM_1897___c 51 TGATCAATGGGTAGAAGAGAGCTTCATTGATTCCCCCTTTTCATGTGTAA 100
BSNT_03230 38 AGAT----CGA-AACGTTTC--------------------AGCCGGA--- 59
|||| ||| || |.|| |.|||||
BPUM_1897___c 101 AGATTAACCGAGAA--TCTCTACCCACTCACATGCACAAAATCCGGACAT 148
BSNT_03230 60 ---CTTCGCACTCT-------TGATGGTTGGAGACCGCGTTCCTCACG-- 97
||.||.|.|.| |||||.|.||.||.|..|||||...||
BPUM_1897___c 149 TTTCTCCGGATTTTGTTTTGATGATGATCGGTGATCATGTTCCGAGCGAA 198
BSNT_03230 98 --ACTGGCTGACCTGGTTAA--AGGGTAAGGGTATCCC---CGTATATGT 140
||| |.|.|...|.|| |.|..||| ||||| ||| |.|
BPUM_1897___c 199 GTACT---TCATCAATTCAAACAAGAAAAG---ATCCCGATCGT---TTT 239
BSNT_03230 141 TTGGCTGACCGAAGACCCATTTTATATGGA--TATCAGC--CT-----AC 181
.|||.||||.|||||.||.|||||||..|| |.||||| || ||
BPUM_1897___c 240 GTGGATGACAGAAGATCCTTTTTATACAGATGTGTCAGCTGCTTGTGCAC 289
BSNT_03230 182 AGGTAATCAAGCTCGCTGACGC-CATATTAACGATTGAACAAAATGCCGT 230
||.|.||.|| || |||||||||.||||
BPUM_1897___c 290 -----ATGATGCGCG-----GCTCATATTAACAATTG------------- 316
BSNT_03230 231 TCTCTATTATCAAGG-GCTCGGC-----TACCAGC--------------- 259
||.|||| |||..|| |||.|||
BPUM_1897___c 317 --------ATGAAGGAGCTTTGCCATTTTACAAGCAATTGGGCATAGGTG 358
BSNT_03230 260 ACGTCTATTATGTTCCGATACCAGTTAAT--------------------- 288
|||.|||.||..||||.||.||.|..|||
BPUM_1897___c 359 ACGCCTACTACTTTCCCATTCCGGCAAATACACGTATTTTTCAAAAAAAC 408
BSNT_03230 289 -CATCGGCTGTTTAAAAAAATGGGCACCGA--ACAATCCTATCATTCAAA 335
.||||.||| ||||||||.|||.|.| |||.|.|
BPUM_1897___c 409 GAATCGCCTG----AAAAAATGTGCATCTACGACATTGC----------- 443
BSNT_03230 336 TCTGTTAATCATCGGCTACCCTTACCCTAATCG-------------GGTT 372
|.||||.||||||||||||||.||||| |.|.
BPUM_1897___c 444 ------ACTCATTGGCTACCCTTACCCCAATCGCACGAAAGCCATTGATA 487
BSNT_03230 373 CA-GCTTA----TGAAAGAA--GCGGTCCATCTGCCATTCACGGTTCGGG 415
|| .|||| .||||.|| ||| |||||.||.|.|.||
BPUM_1897___c 488 CACTCTTACAGCAGAAAAAATGGCG----------CATTCTCGTTGCAGG 527
BSNT_03230 416 TAATCGGCAAGGAATGGGGAAAATATCTGCC---TAAAAAAG-------- 454
| ||||||||| .||| |.| ||||.|||
BPUM_1897___c 528 T-------AAGGAATGG------CATC-GTCATTTAAATAAGATTCGAAG 563
BSNT_03230 455 ---TG--------CTCAAACAGCCGCAT---------AT----TGATGTC 480
|| |||| ||| || ||| |||
BPUM_1897___c 564 ACATGATCGAGATCTCA--------CATTAGTGACCAATTGGCTGA-GTC 604
BSNT_03230 481 GTCAGCACATGGGTTCCACCCGAACAGGCCGTTCAT-TAT-TATAATGGG 528
.||||||.|||| ||..||| ||| .|.|||
BPUM_1897___c 605 CTCAGCAAATGG-----------------CGGGCATCTATCAACAAT--- 634
BSNT_03230 529 GCAGACATCGTAATTAATGCGCATCGTCCCTATCATTTTGCTTTCAACCA 578
|||..||.||..|||||.||||..|.||...|||.|||||.|..|||.|
BPUM_1897___c 635 -CAGCGATTGTTCTTAATCCGCACAGACCAGCTCAATTTGCCTATAACAA 683
BSNT_03230 579 AAATA---CTATGCGCATCAAAAATGCCAGTTTTAATAACCGAACGTTTG 625
|||.| |.||| ||..||||||..||..|.||.||..||.||||||
BPUM_1897___c 684 AAACAAAGCCATG---ATTCAAAATGTAAGCCTGAACAATAGAGCGTTTG 730
BSNT_03230 626 ATATCGCTGCATGC--GAAGCATTTCAATTAACAGATTTAC--CCGCGGC 671
||||||||||| || ||||| ||||||||.||.|||.||| ||||..|
BPUM_1897___c 731 ATATCGCTGCA-GCGGGAAGC-TTTCAATTGACGGATCTACAACCGCCTC 778
BSNT_03230 672 GCATCCTTTTTCATCCTTTATTTCTTATCACGGCATGAACGACTTTAAG- 720
||.|| ||||||..|||...||.||||.|.|..|.|.|||| ||.|
BPUM_1897___c 779 -CAGCC-TTTTCAAGCTTCGCTTTTTATAAAGATAAGGACGA---TATGC 823
BSNT_03230 721 --GAAAAAGCCGCTTTCTAT--ATCAACCACCCTGAAGAACGGCAAAAAG 766
|||.|.|..|..|..||| |||||...||.||||.| .|||||
BPUM_1897___c 824 TAGAACAGGTTGAATATTATGGATCAAATGCCGTGAAAA-----GAAAAG 868
BSNT_03230 767 C---TGCAGCAGCCAATTATAAAGAGACCGTACCC--GCATTTACGTTTG 811
| .|||..|..||||||..||.|...|||..|| |.| |||.||||
BPUM_1897___c 869 CAATCGCACAAAACAATTACGAACAAGTCGTTTCCTGGAA--TACATTTG 916
BSNT_03230 812 A-------------TGAGCTTCCTGCAAAAC-TAAAAGCGATTCATCTGG 847
| .|| |||..|| |||.| ||||| .|
BPUM_1897___c 917 AGTCATTTCCACACAGA-CTTTATG-AAATCGTAAAA-----------AG 953
BSNT_03230 848 CGCTCTCATGA 858
|||.|| ||||
BPUM_1897___c 954 CGCCCT-ATGA 963
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