Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03206 and BPUM_1887
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_03206___yozD.1.24716.seq
# -bsequence dna-align/BPUM_1887___yozD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03206___yozD-BPUM_1887___yozD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03206___yozD-BPUM_1887___yozD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03206___yozD
# 2: BPUM_1887___yozD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 188
# Identity: 125/188 (66.5%)
# Similarity: 125/188 (66.5%)
# Gaps: 28/188 (14.9%)
# Score: 406.0
#
#
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BSNT_03206___ 1 ATGAAAGAAATAGATCTTGTGATTGATACGGAAGAAATCGCTGAATTTTT 50
|||||||||..||||.|.|||||||||||.||.|||||.||.|||||.||
BPUM_1887___y 1 ATGAAAGAAGCAGATTTGGTGATTGATACAGAGGAAATTGCGGAATTCTT 50
BSNT_03206___ 51 TTACAGAGAGCTTG--CAAGACGGGGCTACATACCGAGTGAGGATGAGCT 98
.||||..|||| || ||| |.|.||.|||||||| ||.| |||||
BPUM_1887___y 51 CTACATGGAGC-TGATCAA-AAGAGGGTACATACC---TGCG---GAGCT 92
BSNT_03206___ 99 ------GTTTGAAATCGCTGATATCACCTTTGATTATTTGATAGAAAAAT 142
||||||..|.|||||.||.||.|||||.|||.||.|..|||||.
BPUM_1887___y 93 GGAAACGTTTGAGCTGGCTGACATTACGTTTGAATATATGCTGAAAAAAA 142
BSNT_03206___ 143 GTATGATAAATGAAGAGCTGGATGAAGATGAGTGA--- 177
..||||||..|||| |||||.|.|||.
BPUM_1887___y 143 CAATGATAGTTGAA---------GAAGAGGCGTGGTAG 171
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