Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03204 and BPUM_1885

See Amino acid alignment / Visit BSNT_03204 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:41
# Commandline: needle
#    -asequence dna-align/BSNT_03204___yodL.1.24716.seq
#    -bsequence dna-align/BPUM_1885.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03204___yodL-BPUM_1885.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03204___yodL-BPUM_1885.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03204___yodL
# 2: BPUM_1885
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 332
# Identity:     207/332 (62.3%)
# Similarity:   207/332 (62.3%)
# Gaps:          34/332 (10.2%)
# Score: 544.5
# 
#
#=======================================

BSNT_03204___      1 ---------ATGTT---ATCCGTGTTTAAAAAGAAGTCTTGTTCCTATGA     38
                              |.|||   ||   |.|||.|||||||..|||...|.|.|.|
BPUM_1885          1 ATGCAATTGACGTTGAGAT---TTTTTCAAAAGAAACCTTCAGCATTTCA     47

BSNT_03204___     39 CGTGACAATATTTCAGACACCCCGGTTTGGCG-AAAAAAAGGGCTACAGA     87
                     |.|.||.||.|.|||||||||....|.||||| ...||..||||..|  |
BPUM_1885         48 CTTAACCATTTATCAGACACCTGAATATGGCGCTGCAAGCGGGCATC--A     95

BSNT_03204___     88 GCC-GTCTATCGAACTGAACTGAACGGGAGCGATCATCAAGACGTGCTGA    136
                     ||| ||.||.||.||..||.|...|||.||....||.|..||.||.|||.
BPUM_1885         96 GCCTGTGTACCGGACAAAAATTGGCGGCAGAACACACCTGGATGTTCTGG    145

BSNT_03204___    137 AAAGAGCATTCTCTTTGTTTAATGTATTCGACACTGTTCCGAGTGATTAT    186
                     |||.|||||||||....|||||||||...||.||.||.||.||||||||.
BPUM_1885        146 AAAAAGCATTCTCGACATTTAATGTACATGATACAGTCCCTAGTGATTAC    195

BSNT_03204___    187 GATGCAAGATTTATGGCCACAGGGGACGTGATCCTGATTGATG--AAGGC    234
                     .|||||.|.||||||.|.|||||.||..|..|..|||||||||  |||  
BPUM_1885        196 AATGCACGGTTTATGACAACAGGCGATATTGTTGTGATTGATGATAAG--    243

BSNT_03204___    235 AGAAAAGGGAAAACATATTATCAACTGCTTCCCGCCGGCTGGA-GGAAAA    283
                     |.||||||.||....||||||||.||..||    |||||.||| |||||.
BPUM_1885        244 AAAAAAGGAAAGTGTTATTATCAGCTTTTT----CCGGCAGGATGGAAAC    289

BSNT_03204___    284 TCA---ATCGTCTGATTGTACAAACGACATAA    312
                     .||   |.||.|||||  .|| ||.||..|||
BPUM_1885        290 GCAGTGAGCGACTGAT--GAC-AATGAGTTAA    318


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