Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03200 and BPUM_1884
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_03200___deoD.1.24716.seq
# -bsequence dna-align/BPUM_1884___deoD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03200___deoD-BPUM_1884___deoD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03200___deoD-BPUM_1884___deoD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03200___deoD
# 2: BPUM_1884___deoD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 733
# Identity: 513/733 (70.0%)
# Similarity: 513/733 (70.0%)
# Gaps: 68/733 ( 9.3%)
# Score: 1791.5
#
#
#=======================================
BSNT_03200___ 1 ATGAGTGTACATATAGGTGCTGAAAAAGGACAAATTGCGGATACAGTGCT 50
||||||||||||||.||.||.|||||||||||||||||.||.||.||..|
BPUM_1884___d 1 ATGAGTGTACATATTGGAGCAGAAAAAGGACAAATTGCAGAAACGGTATT 50
BSNT_03200___ 51 TTTGCCGGGAGATCCTCTCAGAGCAAAATTTATTGCAGAAACGTATCTTG 100
..||||.||.|||||.||..|.||.||||.|||||||||.||.|||.|.|
BPUM_1884___d 51 GCTGCCAGGCGATCCGCTTCGTGCGAAATATATTGCAGATACATATTTAG 100
BSNT_03200___ 101 AAAATGTAGAATGCTACAATGAAGTCAGAGGCATGTATGGATTTACGGGT 150
||.||||.||||||||.||.|||||..|.|||||||||||.|.|||.||.
BPUM_1884___d 101 AAGATGTCGAATGCTATAACGAAGTGCGCGGCATGTATGGTTATACTGGA 150
BSNT_03200___ 151 ACATATAAAGGTAAAAAAA-----TCTCAGTACAAGGCACGGGAATGGGT 195
||.||.||||| ||| |.||.||||||||.||.||||||||.
BPUM_1884___d 151 ACCTACAAAGG-----AAAGCGCGTTTCTGTACAAGGAACTGGAATGGGC 195
BSNT_03200___ 196 GTTCCGTCTATTTCAATTTATGTGAATGAATTAATTCAAAGCTTCGATGT 245
||.||.||||||||.|||||||||||||||.|.||||||||||..|||||
BPUM_1884___d 196 GTACCTTCTATTTCGATTTATGTGAATGAACTCATTCAAAGCTATGATGT 245
BSNT_03200___ 246 GCAAAATCTAATAAGAGTCGGTTCTTGCGGCGCTATTCGTAAA---GATG 292
.|||||..||||..|.|||||.||||||||.||.|| .||| ||||
BPUM_1884___d 246 TCAAAACTTAATCCGCGTCGGATCTTGCGGGGCGAT---CAAAAGGGATG 292
BSNT_03200___ 293 TCAAAGTGCGAGACGTCATTTTGGCGATGACCTCCTCAACTGATTCACAA 342
||||.||.||.||.||||||||.||....|||||.|||||.|||||||||
BPUM_1884___d 293 TCAACGTACGTGATGTCATTTTAGCTCAAACCTCTTCAACAGATTCACAA 342
BSNT_03200___ 343 ATGAACAGAGTCGCTTTTGGAAGCATTGATTTTGCGCCTTGCGCAGATTT 392
|||||..|.||.||.||||||...|||||||..||.|||||.||.|||||
BPUM_1884___d 343 ATGAATCGTGTGGCGTTTGGACCGATTGATTACGCACCTTGTGCTGATTT 392
BSNT_03200___ 393 CGAGCTT-TTAAAAAATGCCTATGATGCCGC-AAAGGATAAAGGTGTGCC 440
.|..||| ||||.||| ||.||.||..|.|| .|||.|.||| .||.|
BPUM_1884___d 393 TGGACTTCTTAAGAAA-GCTTACGACACAGCGGAAGCAAAAA---ATGTC 438
BSNT_03200___ 441 GGTG-AC-TGTAGGAAGCGTATTTACAGCTGACCAGTTCTACAACGACGA 488
|.|| || |||.||.|..|||||||||||.||||||||.||.||
BPUM_1884___d 439 GCTGTACGTGTCGGCAATGTATTTACAGCAGACCAGTTTTATAA------ 482
BSNT_03200___ 489 TTCGCAAATTGAAAAAC------------TTGCAAAATACGGTGTGCTTG 526
|||||||| |.||..|||||||..|.||.|
BPUM_1884___d 483 ---------TGAAAAACCACTGGAGCTCATGGCTCAATACGGAATTCTAG 523
BSNT_03200___ 527 GCGTTGAAATGGAAACAACTGCATTGTATACATTAGCAGCGAAGCACGGA 576
...||||||||||.|||||.||..|.|||.|..|.|||||.| |
BPUM_1884___d 524 CAATTGAAATGGAGACAACCGCTCTATATTCGCTTGCAGCAA-------A 566
BSNT_03200___ 577 A-------GAAAAGCCCTGTCAATTCTCACCGTGAGTGATCACGTATTAA 619
| |||||||..|.||.|||||.||.|||||.|||||.||..|.|
BPUM_1884___d 567 ATTTGATCGAAAAGCGTTATCTATTCTGACAGTGAGCGATCATGTTCTCA 616
BSNT_03200___ 620 CAGGAGAAGAAACGACAGCGGAAGAGCGTCAAACGACATTTCATGATATG 669
|||||||||||||.||.||.|||||||||||||||||||||.|.||.|||
BPUM_1884___d 617 CAGGAGAAGAAACAACGGCTGAAGAGCGTCAAACGACATTTGACGAAATG 666
BSNT_03200___ 670 ATAGAAGTGGCTTTACATTCCGTATCACAATAA 702
||...|.|.||..||.|.|||||.|.|.||
BPUM_1884___d 667 ATCTTAATTGCGCTAGACTCCGTTTTATAA--- 696
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