Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03197 and BPUM_1882

See Amino acid alignment / Visit BSNT_03197 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:41
# Commandline: needle
#    -asequence dna-align/BSNT_03197___yodI.1.24716.seq
#    -bsequence dna-align/BPUM_1882___yodI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03197___yodI-BPUM_1882___yodI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03197___yodI-BPUM_1882___yodI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03197___yodI
# 2: BPUM_1882___yodI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 260
# Identity:     159/260 (61.2%)
# Similarity:   159/260 (61.2%)
# Gaps:          16/260 ( 6.2%)
# Score: 409.0
# 
#
#=======================================

BSNT_03197___      1 TTGGAGAGATATTATCATCTTTGCAAAAACCATCAAGGTAAAGTCGTCAG     50
                     .|||||.|.|||.|..|.|||||..|..|.|||...||.|||||||..||
BPUM_1882___y      1 ATGGAGCGCTATCAAAAGCTTTGTCAGCAGCATATGGGAAAAGTCGCTAG     50

BSNT_03197___     51 AATTACAGAGAGAGGCGGGAGAGTTCACGTCGGCAGAATTACCCGTGTAA    100
                     |||.|||||..|....||.|||||.||.||.||..|.|||...||.||.|
BPUM_1882___y     51 AATCACAGATCGTAATGGCAGAGTACATGTTGGACGCATTGAGCGGGTGA    100

BSNT_03197___    101 CAAGAGAC---AGAGTTTTTATAGCTCCGACCGGCGG-----AGGGCCAA    142
                     |||   ||   |.|||.|.|||...|||...||||||     ..|||   
BPUM_1882___y    101 CAA---ACCGTAAAGTGTATATTCGTCCAGTCGGCGGTTCTCGCGGC---    144

BSNT_03197___    143 GAGGTTTCGGTTACGGATATTGGGGCGGTTATTGGGGATACGGAGCAGCT    192
                       ||.||.||.|..||.||||..||.||.||||..||.|..||.||.|||
BPUM_1882___y    145 --GGCTTTGGCTTTGGTTATTACGGTGGATATTACGGCTGGGGTGCCGCT    192

BSNT_03197___    193 TACGGGATTTCCCTCGGTTTAATTACAGGGGTCGCTCTTGCTGGTTTATT    242
                     ||.||.||....||.||.||.||||||||..||||..|.||.||.||.||
BPUM_1882___y    193 TATGGCATCGGGCTTGGGTTCATTACAGGTTTCGCATTAGCAGGATTGTT    242

BSNT_03197___    243 CTTCTGGTAA    252
                     |||.|..|||
BPUM_1882___y    243 CTTTTTTTAA    252


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