Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03194 and BPUM_1880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_03194___ctpA.1.24716.seq
# -bsequence dna-align/BPUM_1880___ctpA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03194___ctpA-BPUM_1880___ctpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03194___ctpA-BPUM_1880___ctpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03194___ctpA
# 2: BPUM_1880___ctpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1481
# Identity: 992/1481 (67.0%)
# Similarity: 992/1481 (67.0%)
# Gaps: 175/1481 (11.8%)
# Score: 3171.5
#
#
#=======================================
BSNT_03194___ 1 TTGAAACGGCAATTAAAACTGTT-----------TTTTATTGTGCTGATC 39
||||||...|||||.|| ||| ||.|||||
BPUM_1880___c 1 TTGAAAAAACAATTTAA---GTTCGTCATCGCCATTCTATTG-------- 39
BSNT_03194___ 40 ACTGCAGTTGTCGCTTCGGCGCTTACTTTATTTATTACGGGCAATTCCAG 89
.||| ||||.||..|.|.|.|.||||| |||
BPUM_1880___c 40 ---ACAG---------CGGCACTGTCCTCAGTGATTAC-----ATT---- 68
BSNT_03194___ 90 TATCCTG-GGCCAAAAATCAA--------CAA--GCACAGGAGACAGCAA 128
|| |..||.|||.||| ||| .|.|||||||
BPUM_1880___c 69 -----TGTGATCACAAAACAAGGGGCTGTCAATGTCTCAGGAGA------ 107
BSNT_03194___ 129 GTTCGACAAATTAAATAAA---------GCGTATGAGCAAATCAAAAG-T 168
.||.||.||.|.|||| |||||| |..||...||||| |
BPUM_1880___c 108 ---TGAGAAGTTTAGTAAACTCATGGCTGCGTAT-ACGAAGGTAAAAGAT 153
BSNT_03194___ 169 GATTATTACCAAAAAACAGATGATGACAAATTAGTAGACGGAGCAATTAA 218
||.||||||.|||||||.||||||.|.|||.|||||||.||.||.|||.|
BPUM_1880___c 154 GAGTATTACGAAAAAACGGATGATCAAAAACTAGTAGATGGTGCGATTCA 203
BSNT_03194___ 219 AGGAATGATTCAATCACTGGATGATCCGTATTCTACATATATGGATCAAG 268
||||||||||..||||||.||||||||.||.|||||||||||||||||.|
BPUM_1880___c 204 AGGAATGATTGCATCACTTGATGATCCATACTCTACATATATGGATCAGG 253
BSNT_03194___ 269 AGCAAGCGAAATCATTCGACGAGACGATTTCAGCATCTTTTGAAGGAATC 318
||.||||..||..|||..||.|.||.|||||..||||.|||||||||||.
BPUM_1880___c 254 AGGAAGCCGAAGGATTTAACAACACCATTTCTTCATCATTTGAAGGAATT 303
BSNT_03194___ 319 GGAGCCCAAGTAGAGGAGAAAGACGGAGAAATCCTTATTGTATCCCCAAT 368
||.||.||||||||.|||||.||.|||.||||..|.|||||..|.||.||
BPUM_1880___c 304 GGTGCGCAAGTAGAAGAGAAGGATGGACAAATTTTAATTGTCGCACCGAT 353
BSNT_03194___ 369 TAAAGGTTCACCTGCTGAAAAAGCCGGTATCAAACCGAGGGACCAAATCA 418
.|||||.||.|||||||||||||||||..|.|||||....||.|..||..
BPUM_1880___c 354 AAAAGGCTCTCCTGCTGAAAAAGCCGGGTTGAAACCTCATGATCGTATTT 403
BSNT_03194___ 419 TTAAGGTAAATGGAAAAAGCGTAAAAGGCATGAATGTAAATGAAGCCGTC 468
|.|||||..|||||||||||..||||||||||...||.|||.||||.|||
BPUM_1880___c 404 TAAAGGTGGATGGAAAAAGCACAAAAGGCATGTCAGTCAATCAAGCAGTC 453
BSNT_03194___ 469 GCTTTAATCCGAGGCAAAAAGGGCACAAAGGTGAAGCTGGAACTGAACAG 518
.||.|||||.||||.|||||.||.||..|.||||||||..|.||.|||
BPUM_1880___c 454 TCTCTAATCAGAGGGAAAAAAGGTACCGATGTGAAGCTACACCTTAAC-- 501
BSNT_03194___ 519 AGCG----GGAGTGGGGAATATCGATCTTTCCATTAAGCGCGATACCATT 564
|| ||||||||.|||.|.|||.|..||||.|...|.||.||||||
BPUM_1880___c 502 --CGCCAAGGAGTGGGCAATGTTGATGTGACCATCACAAGAGACACCATT 549
BSNT_03194___ 565 CCTGTAGAGACTGTCTAT-------TCAGAGATGAAAGACAACAACATTG 607
||.||.||.||.||.||| |||.| |||| ||||.||.|
BPUM_1880___c 550 CCGGTTGAAACAGTGTATGCAAAACTCACA----AAAG---ACAAAATAG 592
BSNT_03194___ 608 GAGAAATTCAAATCACTTCTTTCTCTGAAACAACAGCTAAAGAGCTGACA 657
|||||||.|||||.||.||.||..|||||||||||.|.||||||.| |
BPUM_1880___c 593 GAGAAATCCAAATTACGTCCTTTGCTGAAACAACATCGAAAGAGTT---A 639
BSNT_03194___ 658 GAT---GCGATTGACGGTTTAGAGAAAAAAGGCGCCAAAGGCTATATTTT 704
||| ||.|||||.|...|.|||||||||||.||.|||||.|.|.|..|
BPUM_1880___c 640 GATAAAGCCATTGATGACCTCGAGAAAAAAGGGGCAAAAGGGTTTGTCAT 689
BSNT_03194___ 705 AGACTTGAGAGGCAACCCGGGCGGCTTAATGGAACAG--GCGATTACGAT 752
.|||.||||||..||.||.||||||.|.||| |||| ||||||...||
BPUM_1880___c 690 TGACCTGAGAGATAATCCAGGCGGCATCATG--ACAGAAGCGATTGAAAT 737
BSNT_03194___ 753 GAGCAACCTG--TTCATTGATAAAGGGAAAAACATCATGCAGGTTGAATA 800
|||.|| || ||.||.||||||||||||..|||||||||.||||| |
BPUM_1880___c 738 GAGTAA--TGACTTTATCGATAAAGGGAAAGTCATCATGCAAGTTGA--A 783
BSNT_03194___ 801 CAAAAACGGTTCA--AAAGAAGTCATGAAGGCCGAAAAAGAACGGAAAGT 848
.|||||.|| | |||||||.....|||||.|||||||||||.|||||
BPUM_1880___c 784 GAAAAAGGG---AAGAAAGAAGAGTACAAGGCTGAAAAAGAACGTAAAGT 830
BSNT_03194___ 849 GACCA--AGCCGACCGTCGTTTTAGTAAATGACGGTACAGCAAGCGCAGC 896
| || |||||.|.||.||..|.|||||||.|||..||||.|||||.||
BPUM_1880___c 831 G--CATCAGCCGGCAGTTGTCCTTGTAAATGGCGGCTCAGCCAGCGCTGC 878
BSNT_03194___ 897 CGAAATTATGGCCGCTGCCCTTCATGAATCGTCAAACGTACCGTTA---- 942
.|||||.|||||.||.||.||.||..|.||.|| |.||| |||
BPUM_1880___c 879 AGAAATCATGGCAGCGGCTCTGCACCAGTCTTC--AGGTA---TTAAAAT 923
BSNT_03194___ 943 -ATCGGCGAGACGACATTCGGAAAAGGTACAGTGCAAACGGC-AAAAGAA 990
||.||.||.|..|||||.||.|||||.||.||.||||..|| .|||| .
BPUM_1880___c 924 TATTGGTGAAAAAACATTTGGTAAAGGAACTGTTCAAAATGCGCAAAG-C 972
BSNT_03194___ 991 TATGATGATGGCTCTACTGTCAAACTGACAGTTGCCAAATGGCTGACTGC 1040
|||.|||||||.||||.||||||..|.||..|||||||.||||||||..|
BPUM_1880___c 973 TATAATGATGGTTCTAGTGTCAAGTTAACCATTGCCAAGTGGCTGACGCC 1022
BSNT_03194___ 1041 TGACGGCGAATGGATTCACAAAAAAGGCATCAAGCCTCAAGTGAAAGC-T 1089
.||.||...||||||||||||||||||.||..|.||.||.||.||||| |
BPUM_1880___c 1023 GGATGGTTCATGGATTCACAAAAAAGGAATTGAACCACAGGTCAAAGCAT 1072
BSNT_03194___ 1090 GAGCTGCCTGATTACGCGAAGCTGCCGTATTTGGACGCAGATAAAACGTA 1139
.| ||.||...|||.||.||||||||.||.||...|.|..|.|||||||
BPUM_1880___c 1073 CA-CTCCCAAGTTATGCAAAGCTGCCATACTTAAGCCCGAAAAAAACGT- 1120
BSNT_03194___ 1140 CAAATCAGGTGA--TACAG-GCACA--AACGTCAAAGTGGCTCAGAAAAT 1184
|||||.||| .|||| |.|.| || |||||||.||||||.|||||
BPUM_1880___c 1121 ---ATCAGCTGAATGACAGTGGAGATGAA-GTCAAAGCGGCTCAAAAAAT 1166
BSNT_03194___ 1185 GCTCAAAGCACTTGGTTACAAGGTAAACGTTAA----CAGTACGTATGA- 1229
|.||.||||.||||..|||||.|.|||.|..|| .|||||| ||.|
BPUM_1880___c 1167 GTTCCAAGCGCTTGACTACAAAGCAAAAGCAAATGGTGAGTACG-ATCAA 1215
BSNT_03194___ 1230 -----CCAGGATTTTGTATCTGTCGTCAAACAGTTCCAGAAAAAAGAGGA 1274
||||| |..||||||||.|.|||||.|.|.|..|.||
BPUM_1880___c 1216 GCCTTCCAGG---------CGATCGTCAAAAAATTCCAAACAGATAACGA 1256
BSNT_03194___ 1275 GCTGAAAG-AAACAGGCATACTGACTGGCGATACAACAACGAAATTAATG 1323
.||||||| |.|| ||.||..||||.||.||||||||.||...|.|.|||
BPUM_1880___c 1257 TCTGAAAGCAGAC-GGAATTTTGACGGGAGATACAACGACAGTACTGATG 1305
BSNT_03194___ 1324 ATAGAACTTCAAAAGAAGCTGTCTGATAATGATACGCAAATGGAAAAGGC 1373
|.|.||.|||||.|.|||||.....|.|||||||||||||||.||||.||
BPUM_1880___c 1306 ACAAAAATTCAAGATAAGCTAAAGAACAATGATACGCAAATGAAAAAAGC 1355
BSNT_03194___ 1374 AATTGAAACACTGAAAAAAGAAATGTAA--- 1401
.||||||....||||||||||||||.||
BPUM_1880___c 1356 GATTGAAGTCTTGAAAAAAGAAATGAAATAA 1386
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