Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03182 and BPUM_1876
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_03182___yodC.1.24716.seq
# -bsequence dna-align/BPUM_1876.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03182___yodC-BPUM_1876.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03182___yodC-BPUM_1876.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03182___yodC
# 2: BPUM_1876
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 633
# Identity: 440/633 (69.5%)
# Similarity: 440/633 (69.5%)
# Gaps: 39/633 ( 6.2%)
# Score: 1422.0
#
#
#=======================================
BSNT_03182___ 1 ATGACG---------AATACTCTGGATGTTTTAAAAGCACGTGCATCTGT 41
|||.|| ||.||..|.||..||||||||..|.|.||.||.||
BPUM_1876 1 ATGGCGACTGATCAAAAAACGATTGACATTTTAAAACAAAGAGCTTCAGT 50
BSNT_03182___ 42 AAAGGAATATGATACAA---ATGCCCCGATCTCTAAGGAGGAGCTGACTG 88
|||.||.|||||||||| ||| ..||..|.||.||.|||||.||.|
BPUM_1876 51 AAAAGAGTATGATACAACTCATG---AAATGACAAAAGAAGAGCTAACAG 97
BSNT_03182___ 89 AGCTATTAGACTTTGCCGCTAAAGCGCCTTCTGCTTGGAACCTTCAGCAT 138
|||||.|.||..|..|..|.|||||.||.|||||.|||||||||||||||
BPUM_1876 98 AGCTACTTGATATCACAACAAAAGCTCCATCTGCGTGGAACCTTCAGCAT 147
BSNT_03182___ 139 TGGCATTTTACAGTATTCCACAGCGATGAATCAAAAGCGGAGCTTCTTCC 188
|||||||||||.||.||||||||.|.||||||.||||||.||.|.|||||
BPUM_1876 148 TGGCATTTTACTGTGTTCCACAGTGCTGAATCCAAAGCGAAGTTACTTCC 197
BSNT_03182___ 189 TGTAGCGTATAATCAAAAACAAATCGTTGAGTCTTCTGCTGTTGTTGCCA 238
..|.||.|||||.|||||.||||||....|..|.||.||||||.||||..
BPUM_1876 198 AATCGCTTATAACCAAAAGCAAATCTCACAAGCATCAGCTGTTATTGCTG 247
BSNT_03182___ 239 TTTTAGGCGAT-TTAAAGGCAAATGAAAACGGTGAAGAAGTTTATGCCGA 287
|..||||.||| ||.|| ||.|||.||||.||.|||.||.|.|| .|
BPUM_1876 248 TACTAGGTGATCTTGAA-GCCAATCAAAATGGCGAAAAAATCTA----CA 292
BSNT_03182___ 288 ATTAGCAAGC----CAAGGCTATATTACGGATGAAATCAAACAAACATTG 333
.|.|||..|| |||||.|..|||||.||.||.||||||.||||||||
BPUM_1876 293 GTGAGCTGGCAGAACAAGGGTTCATTACTGAAGACATCAAAGAAACATTG 342
BSNT_03182___ 334 CTCGGC-CAAATCAACGGTGCTTACCAAAGCGAGCAATTCGCACGTGATT 382
.| |.| ||||||||.||.||.||.|||||||||||.|..||||||||..
BPUM_1876 343 AT-GACTCAAATCAATGGCGCATATCAAAGCGAGCAGTATGCACGTGAAG 391
BSNT_03182___ 383 CCGCTTTCTTAAATGCTTCTTTAGCTGCTATGCAGCTTATGATTGCCGCA 432
|.||.|..|.|||||||||.||||||||||||||..|.||||||||.|||
BPUM_1876 392 CTGCGTATTCAAATGCTTCATTAGCTGCTATGCAATTAATGATTGCTGCA 441
BSNT_03182___ 433 AAAGCAAAAGGTTATGACACTTGCGCAATTGGCGGATTTAACAAAGAGCA 482
|||||||..||.|||||.||.||.|||||.||.||.||.|..||||| |
BPUM_1876 442 AAAGCAATGGGCTATGATACATGTGCAATGGGTGGTTTCAGTAAAGA--A 489
BSNT_03182___ 483 G--TTC--CAAAAGCAATTTGATATCAGTGAGCGCTATGTTCCGGTTATG 528
| ||| |||| .||||..||.|.||.|..||.||.|..||.||.|||
BPUM_1876 490 GCCTTCATCAAA--GAATTCAATGTAAGCGGACGTTACGAGCCAGTCATG 537
BSNT_03182___ 529 CTAATTTCAATCGGCAAAGCAGTGAAGCCTGCGCATCAAAGCAACCGTCT 578
.|.||||||.|.||.|||||||.|||....||.|||.|||||||||||.|
BPUM_1876 538 TTGATTTCAGTTGGTAAAGCAGCGAAAGAAGCTCATAAAAGCAACCGTTT 587
BSNT_03182___ 579 GCCGCTTTC--AAAAGTATCAACTTGGCTGTAA 609
||...|| |.|||||||...||..||.|||
BPUM_1876 588 --CGACATCGAAGAAGTATCTGATTTTCTTTAA 618
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