Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03181 and BPUM_1875

See Amino acid alignment / Visit BSNT_03181 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:40
# Commandline: needle
#    -asequence dna-align/BSNT_03181___yodB.1.24716.seq
#    -bsequence dna-align/BPUM_1875___yodB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03181___yodB-BPUM_1875___yodB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03181___yodB-BPUM_1875___yodB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03181___yodB
# 2: BPUM_1875___yodB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 365
# Identity:     227/365 (62.2%)
# Similarity:   227/365 (62.2%)
# Gaps:          58/365 (15.9%)
# Score: 656.5
# 
#
#=======================================

BSNT_03181___      1 GTGGGAAATACGA-TGTGCCCTAAAATGGAATCCGCA----TTCTCATTG     45
                      ..||||.|.|.| |.||.||..|.||    ||.|||    ||.|.|.||
BPUM_1875___y      1 -ATGGAATTTCAATTATGTCCACACAT----TCAGCAAGCTTTTTTACTG     45

BSNT_03181___     46 CTGGGAAAACGATGGAACGGTCTGATCATCCATGTGCTAATGGATGGGCC     95
                     ||.||.|||.|.|||||.|||||.||.||.|||||..|..|.|||||.||
BPUM_1875___y     46 CTAGGCAAAAGGTGGAATGGTCTCATTATTCATGTATTGCTTGATGGTCC     95

BSNT_03181___     96 GAAACGGTTTAAAGAGATAACGGAAACAATA-CCGAT-GATCAGCCAAAA    143
                     .||.||.||||||||.||.||||  |||.|| ||.|| .|||||.||.||
BPUM_1875___y     96 AAAGCGATTTAAAGACATGACGG--ACATTATCCCATCTATCAGTCAGAA    143

BSNT_03181___    144 AATGTTGGCAGAGCGCTTGAAGGAGCTTGAACAAAACGAGATTGT----C    189
                     ||||.|.||||||||.||.||.||.|||||..||.|.|.||||.|    |
BPUM_1875___y    144 AATGCTCGCAGAGCGTTTAAAAGAACTTGAGGAAGAAGGGATTATAAAGC    193

BSNT_03181___    190 GAACGGCAGGTTCTCCCTGAAACGCCGGTCAAAGTCATCTACACGCTG--    237
                     ||||    .||.||.|||||.|||||.||.||||||||.||    .||  
BPUM_1875___y    194 GAAC----TGTACTTCCTGAGACGCCTGTTAAAGTCATTTA----TTGTT    235

BSNT_03181___    238 --ACTGAAAAAGGAACAGCGCTTCAAGCTGTATTTCAAGAG--ATGCAGG    283
                       |||||||||||||..|||||.||.|.|||.|||||.|||  ||..|||
BPUM_1875___y    236 TAACTGAAAAAGGAAATGCGCTACATGATGTGTTTCATGAGGTATCTAGG    285

BSNT_03181___    284 CATGGGCCGATCAATTTTGCGAGCCTGGTGACACAGTGT---GTGAAGAA    330
                       |||||.|...|||               |.||||..|   .||||.||
BPUM_1875___y    286 --TGGGCAGGGGAAT---------------ATACAGCATCTCATGAAAAA    318

BSNT_03181___    331 GAGAAATAA------    339
                     .||.|..||      
BPUM_1875___y    319 AAGGAGCAAGCCTAG    333


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