Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03181 and BPUM_1875
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_03181___yodB.1.24716.seq
# -bsequence dna-align/BPUM_1875___yodB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03181___yodB-BPUM_1875___yodB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03181___yodB-BPUM_1875___yodB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03181___yodB
# 2: BPUM_1875___yodB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 365
# Identity: 227/365 (62.2%)
# Similarity: 227/365 (62.2%)
# Gaps: 58/365 (15.9%)
# Score: 656.5
#
#
#=======================================
BSNT_03181___ 1 GTGGGAAATACGA-TGTGCCCTAAAATGGAATCCGCA----TTCTCATTG 45
..||||.|.|.| |.||.||..|.|| ||.||| ||.|.|.||
BPUM_1875___y 1 -ATGGAATTTCAATTATGTCCACACAT----TCAGCAAGCTTTTTTACTG 45
BSNT_03181___ 46 CTGGGAAAACGATGGAACGGTCTGATCATCCATGTGCTAATGGATGGGCC 95
||.||.|||.|.|||||.|||||.||.||.|||||..|..|.|||||.||
BPUM_1875___y 46 CTAGGCAAAAGGTGGAATGGTCTCATTATTCATGTATTGCTTGATGGTCC 95
BSNT_03181___ 96 GAAACGGTTTAAAGAGATAACGGAAACAATA-CCGAT-GATCAGCCAAAA 143
.||.||.||||||||.||.|||| |||.|| ||.|| .|||||.||.||
BPUM_1875___y 96 AAAGCGATTTAAAGACATGACGG--ACATTATCCCATCTATCAGTCAGAA 143
BSNT_03181___ 144 AATGTTGGCAGAGCGCTTGAAGGAGCTTGAACAAAACGAGATTGT----C 189
||||.|.||||||||.||.||.||.|||||..||.|.|.||||.| |
BPUM_1875___y 144 AATGCTCGCAGAGCGTTTAAAAGAACTTGAGGAAGAAGGGATTATAAAGC 193
BSNT_03181___ 190 GAACGGCAGGTTCTCCCTGAAACGCCGGTCAAAGTCATCTACACGCTG-- 237
|||| .||.||.|||||.|||||.||.||||||||.|| .||
BPUM_1875___y 194 GAAC----TGTACTTCCTGAGACGCCTGTTAAAGTCATTTA----TTGTT 235
BSNT_03181___ 238 --ACTGAAAAAGGAACAGCGCTTCAAGCTGTATTTCAAGAG--ATGCAGG 283
|||||||||||||..|||||.||.|.|||.|||||.||| ||..|||
BPUM_1875___y 236 TAACTGAAAAAGGAAATGCGCTACATGATGTGTTTCATGAGGTATCTAGG 285
BSNT_03181___ 284 CATGGGCCGATCAATTTTGCGAGCCTGGTGACACAGTGT---GTGAAGAA 330
|||||.|...||| |.||||..| .||||.||
BPUM_1875___y 286 --TGGGCAGGGGAAT---------------ATACAGCATCTCATGAAAAA 318
BSNT_03181___ 331 GAGAAATAA------ 339
.||.|..||
BPUM_1875___y 319 AAGGAGCAAGCCTAG 333
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