Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03173 and BPUM_1873
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_03173___yozR.1.24716.seq
# -bsequence dna-align/BPUM_1873___yozR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03173___yozR-BPUM_1873___yozR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03173___yozR-BPUM_1873___yozR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03173___yozR
# 2: BPUM_1873___yozR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 526
# Identity: 318/526 (60.5%)
# Similarity: 318/526 (60.5%)
# Gaps: 104/526 (19.8%)
# Score: 886.0
#
#
#=======================================
BSNT_03173___ 1 ATGTTTGAGTGGAA-CAAGTACTTTCCTTTCCACAATCAATTTTCTAAAG 49
||||||||.||||| |.|.|| ||.|||||.||.||.||||||||.||||
BPUM_1873___y 1 ATGTTTGACTGGAACCGATTA-TTCCCTTTTCAAAAGCAATTTTCAAAAG 49
BSNT_03173___ 50 AAGCATTAAAAAAAGCTGATCCGAAAGAAGTTGAAACGTATGTCAATCGT 99
||||.||||||||..|.||.||.|||||.||.||...|||.|||||||..
BPUM_1873___y 50 AAGCCTTAAAAAATTCAGACCCTAAAGACGTCGAGCAGTACGTCAATCAA 99
BSNT_03173___ 100 GTGATGGAAAGTGTGTTCGGCAGTGATTATGCGGCTCAATTTCCTTTCCG 149
||||||||||||||.||||||....|||||.|.|||||.||.|||||.|.
BPUM_1873___y 100 GTGATGGAAAGTGTATTCGGCTCCAATTATCCTGCTCAGTTCCCTTTTCA 149
BSNT_03173___ 150 CGATCCTCTCCCCCAA----AAAGAACATCCCGCCAAACCTGATGCAA-A 194
.||.||.|||.|.||| |||.||| |.|| |
BPUM_1873___y 150 GGACCCACTCTCTCAACATCAAAAAAC-----------------GAAAGA 182
BSNT_03173___ 195 ACCTGATGTCA------------AACCTGATATTGATATATTCGAAACAG 232
|.|.||.|||| ||||.||..|.||..|.||.|||||..
BPUM_1873___y 183 AACAGACGTCAAAAAAGAAAAAGAACCCGAAGTGGAAGTGTTTGAAACCA 232
BSNT_03173___ 233 CAGACCATGTGTTTGTAAAG-------GTGCCAATCAG-CGAAGA-ATGG 273
|.||.||.|||||.||.||| .||| ||.| ||||.| |
BPUM_1873___y 233 CTGATCACGTGTTCGTTAAGCTTGAGCTTGC---TCGGCCGAACACA--- 276
BSNT_03173___ 274 CTGGAACAAGTGAGAATCAAACACACATCTCA-----CGAATTATGG--- 315
|||.||||.|.|||||||||.|||.| || |.|.||||.|
BPUM_1873___y 277 ---GAAAAAGTAAAAATCAAACATACAGC-CAACCTGCTATTTATTGATC 322
BSNT_03173___ 316 --TTGGAAAACCTCCCAAGAGCAGATCATCCGAAAAAAGTAAACCTTCCT 363
|| |||..|| |.||.|...|.|||.|||||...|||.|||
BPUM_1873___y 323 ATTT--------TCCTGAG-GAAGGTACGCAGAAGAAAGTCGTCCTCCCT 363
BSNT_03173___ 364 --TGTTTAGTCAAACGCAAAGGAACAAAAGCCGTC-TATAAGGATGGCCT 410
||.| ||.|||.|.||||||||.|||| |.|| |||.||||.||..|
BPUM_1873___y 364 GCTGCT--GTGAAAAGAAAAGGAACGAAAG-CTTCATATCAGGACGGTAT 410
BSNT_03173___ 411 TCTGGAAGTCATGTTTCAAAAGCAGCAAGACTACAATATG-TCCGAGGTA 459
|.||||..|.||||||..||| |||..||| |||| ||.|
BPUM_1873___y 411 TTTGGAGATTATGTTTTTAAA-----------ACATGATGATCCG-GGGA 448
BSNT_03173___ 460 -----GAAATC---ATCCGATAA--- 474
|||||| ||.|.||.|
BPUM_1873___y 449 TTTCTGAAATCGATATTCCATTATAA 474
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