Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03173 and BPUM_1873

See Amino acid alignment / Visit BSNT_03173 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:40
# Commandline: needle
#    -asequence dna-align/BSNT_03173___yozR.1.24716.seq
#    -bsequence dna-align/BPUM_1873___yozR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03173___yozR-BPUM_1873___yozR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03173___yozR-BPUM_1873___yozR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03173___yozR
# 2: BPUM_1873___yozR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 526
# Identity:     318/526 (60.5%)
# Similarity:   318/526 (60.5%)
# Gaps:         104/526 (19.8%)
# Score: 886.0
# 
#
#=======================================

BSNT_03173___      1 ATGTTTGAGTGGAA-CAAGTACTTTCCTTTCCACAATCAATTTTCTAAAG     49
                     ||||||||.||||| |.|.|| ||.|||||.||.||.||||||||.||||
BPUM_1873___y      1 ATGTTTGACTGGAACCGATTA-TTCCCTTTTCAAAAGCAATTTTCAAAAG     49

BSNT_03173___     50 AAGCATTAAAAAAAGCTGATCCGAAAGAAGTTGAAACGTATGTCAATCGT     99
                     ||||.||||||||..|.||.||.|||||.||.||...|||.|||||||..
BPUM_1873___y     50 AAGCCTTAAAAAATTCAGACCCTAAAGACGTCGAGCAGTACGTCAATCAA     99

BSNT_03173___    100 GTGATGGAAAGTGTGTTCGGCAGTGATTATGCGGCTCAATTTCCTTTCCG    149
                     ||||||||||||||.||||||....|||||.|.|||||.||.|||||.|.
BPUM_1873___y    100 GTGATGGAAAGTGTATTCGGCTCCAATTATCCTGCTCAGTTCCCTTTTCA    149

BSNT_03173___    150 CGATCCTCTCCCCCAA----AAAGAACATCCCGCCAAACCTGATGCAA-A    194
                     .||.||.|||.|.|||    |||.|||                 |.|| |
BPUM_1873___y    150 GGACCCACTCTCTCAACATCAAAAAAC-----------------GAAAGA    182

BSNT_03173___    195 ACCTGATGTCA------------AACCTGATATTGATATATTCGAAACAG    232
                     |.|.||.||||            ||||.||..|.||..|.||.|||||..
BPUM_1873___y    183 AACAGACGTCAAAAAAGAAAAAGAACCCGAAGTGGAAGTGTTTGAAACCA    232

BSNT_03173___    233 CAGACCATGTGTTTGTAAAG-------GTGCCAATCAG-CGAAGA-ATGG    273
                     |.||.||.|||||.||.|||       .|||   ||.| ||||.| |   
BPUM_1873___y    233 CTGATCACGTGTTCGTTAAGCTTGAGCTTGC---TCGGCCGAACACA---    276

BSNT_03173___    274 CTGGAACAAGTGAGAATCAAACACACATCTCA-----CGAATTATGG---    315
                        |||.||||.|.|||||||||.|||.| ||     |.|.||||.|   
BPUM_1873___y    277 ---GAAAAAGTAAAAATCAAACATACAGC-CAACCTGCTATTTATTGATC    322

BSNT_03173___    316 --TTGGAAAACCTCCCAAGAGCAGATCATCCGAAAAAAGTAAACCTTCCT    363
                       ||        |||..|| |.||.|...|.|||.|||||...|||.|||
BPUM_1873___y    323 ATTT--------TCCTGAG-GAAGGTACGCAGAAGAAAGTCGTCCTCCCT    363

BSNT_03173___    364 --TGTTTAGTCAAACGCAAAGGAACAAAAGCCGTC-TATAAGGATGGCCT    410
                       ||.|  ||.|||.|.||||||||.|||| |.|| |||.||||.||..|
BPUM_1873___y    364 GCTGCT--GTGAAAAGAAAAGGAACGAAAG-CTTCATATCAGGACGGTAT    410

BSNT_03173___    411 TCTGGAAGTCATGTTTCAAAAGCAGCAAGACTACAATATG-TCCGAGGTA    459
                     |.||||..|.||||||..|||           |||..||| |||| ||.|
BPUM_1873___y    411 TTTGGAGATTATGTTTTTAAA-----------ACATGATGATCCG-GGGA    448

BSNT_03173___    460 -----GAAATC---ATCCGATAA---    474
                          ||||||   ||.|.||.|   
BPUM_1873___y    449 TTTCTGAAATCGATATTCCATTATAA    474


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