Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03172 and BPUM_1872
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_03172___yojE.1.24716.seq
# -bsequence dna-align/BPUM_1872___rarD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03172___yojE-BPUM_1872___rarD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03172___yojE-BPUM_1872___rarD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03172___yojE
# 2: BPUM_1872___rarD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 990
# Identity: 590/990 (59.6%)
# Similarity: 590/990 (59.6%)
# Gaps: 177/990 (17.9%)
# Score: 1574.5
#
#
#=======================================
BSNT_03172___ 1 ATGCAATATTCA--GA--AACA--AA--AAAAGGCGTTATTTACACAGCC 42
||.| || |||| || ||||||.|||.|.||.||.||.
BPUM_1872___r 1 --------TTGAACGAACAACAGCAATCAAAAGGTGTTCTCTATACGGCA 42
BSNT_03172___ 43 GTTTCCTTTATCA-TGTGGGGCCTGTTTCCGCTCTATTGGAAGCTTCTCG 91
|..||.|||| || |.|||||..|.||.|||.|.||||||||.||..|.|
BPUM_1872___r 43 GCATCTTTTA-CATTATGGGGGTTATTCCCGTTATATTGGAAACTGATGG 91
BSNT_03172___ 92 AACA----GCTGCCGGCTCTTGATATTTTGGCTCATCGTATTATATGGTC 137
|||| .|..|.||| ||.|||||.||.||..|.|||.|||||||
BPUM_1872___r 92 AACATATTTCGTCAGGC----GAAATTTTAGCGCACAGAATTTTATGGTC 137
BSNT_03172___ 138 TTTTGTTTTTATGT---GTATCGTACTTTTTTTCTTGCGGCAATGGAAAA 184
.||||||||||||| ||||..|.||.|.||| ||||
BPUM_1872___r 138 ATTTGTTTTTATGTGCGGTATTCTTCTGTATTT-------------AAAA 174
BSNT_03172___ 185 TAGG-----------ATG--------GCAGGAGCTGC--GCTCTCTGAAA 213
.|.| ||| |.|||..|| | ||||..||..|
BPUM_1872___r 175 CAAGTCCGGCCAGCCATGCAGACAGTGAAGGGTCT-CATGCTCGATGGTA 223
BSNT_03172___ 214 AAGAACGGAGGGATCCTCTCTTTATTTCTTGCTTCTATCCTGATTTCGAT 263
|||.|| |..|.||.|||.|.||..||.||||..|.||.|||.|
BPUM_1872___r 224 AAGCAC-------TTTTTTCATTACTACTATCTGCTATTTTAATATCGGT 266
BSNT_03172___ 264 CAACTGGTTTGTATACATATGGGCTGTAAACCATGGCTTTTTGCTTGAGG 313
.|||||||.|||.|||||.|||||.||.||||||....||.||||.||.|
BPUM_1872___r 267 TAACTGGTATGTGTACATTTGGGCAGTCAACCATCATCTTATGCTAGAAG 316
BSNT_03172___ 314 CTAGTCTTGGCTATTACATTAATCCGCTTGTATCAGTGCTCCTTGGGATT 363
|||||.|.||.|||||.||||||||||||||.||.||..|.||.|||||.
BPUM_1872___r 317 CTAGTTTAGGGTATTATATTAATCCGCTTGTCTCTGTTTTACTAGGGATC 366
BSNT_03172___ 364 TTATTTTTAAAGGAAAAACTGAATCGCCTGCAATTA------GTGGCCGT 407
.|.||.||.|||||....||.||| .||||| .|.||..|
BPUM_1872___r 367 ATTTTCTTGAAGGAGCGGCTCAAT------AAATTACAAACCATTGCGAT 410
BSNT_03172___ 408 TTCGATTGCGGCAGCCGGTGTCATCATCTCGGCGTTCCAATACGGCTCCA 457
||..|||||.|||||.||.||.||..|.||..||.|.||.|||||.||..
BPUM_1872___r 411 TTTAATTGCCGCAGCAGGAGTGATTCTTTCTACGATTCAGTACGGTTCAT 460
BSNT_03172___ 458 TTCCTTATGTTGCGCTTCTCCTCGCATTCAGCTTTGGGCTGTACGGGTTA 507
|||||..||||||..|..|.||.||.||.|||||.||..|.||.||.||.
BPUM_1872___r 461 TTCCTGTTGTTGCCATATTACTTGCCTTTAGCTTCGGTTTTTATGGATTG 510
BSNT_03172___ 508 AGCAAAAAAAGAACAAGCCTGCCGAGCGCCATCGGTTTAACGCTGGAAAC 557
|..||||||||||..|||.|..||||.|||||.|||||.||..|.|||||
BPUM_1872___r 511 ATTAAAAAAAGAATGAGCTTTACGAGTGCCATTGGTTTGACCATTGAAAC 560
BSNT_03172___ 558 ATTCATGATTATGCCGATT---------GCA----TTAGGGTAT-----T 589
||.|.|| ||| || |||| |
BPUM_1872___r 561 ------------GCTGCTTCTCGCACCGGCAGCTCTT---GTATACTTAT 595
BSNT_03172___ 590 TGCTGTTC---AGCGGACATGTTCAGCCAGCGGGTG-CA--GAA------ 627
||.|.||| |..|.||.||| .||| || |||
BPUM_1872___r 596 TGTTCTTCTTAAAAGAACCTGT----------CGTGACAATGAATCCTAA 635
BSNT_03172___ 628 -AG---CGGAGGGACGTGG-CTGCTTCTCTTTTTGGCCGGTGTGTTTACG 672
|| ||||..| |.||| ||| .|.||.||.||.||.||.|||||.
BPUM_1872___r 636 CAGCTTCGGATCG-CTTGGTCTG---TTATTCTTCGCAGGGGTCTTTACT 681
BSNT_03172___ 673 GCTTTGCCGC-TCTTATTGTTTGCGGAAGGAGCGAAACGGCTGCCACTGT 721
||..|.|||| |||| ||.||..|.|||||.||.|||.|..|.||.||.|
BPUM_1872___r 682 GCGGTACCGCTTCTT-TTATTCTCTGAAGGGGCAAAAAGAATTCCTCTTT 730
BSNT_03172___ 722 ATCAAGTCGGTATCTTACAATATATTGCGCCGACCATTACCCTTCTGATC 771
|||||||.|||||.||.|||||.|||||.||.||.|||||.||..|..|.
BPUM_1872___r 731 ATCAAGTGGGTATTTTGCAATACATTGCACCAACGATTACGCTGTTTTTG 780
BSNT_03172___ 772 GGGCTGTTTGTTTACCATGAGCCATT----TTCAAGCTCGAAGGCTT-TT 816
|||.|||||||.||.||.||| |||| ||| ||||..|| || |.
BPUM_1872___r 781 GGGTTGTTTGTGTATCACGAG-CATTTATCTTC-AGCTAAAA---TTGTG 825
BSNT_03172___ 817 ACATTCAGCTGTATATGGGCTGCGCTGATCTTGTTTACGTTTTCACAAGT 866
||.||....|||||.||||..|||.|..|.|||||||||...||.||| |
BPUM_1872___r 826 ACGTTTCTTTGTATCTGGGTGGCGATTTTATTGTTTACGACCTCTCAA-T 874
BSNT_03172___ 867 GAAG--TGGAAACGGGCGTCAAAAAGC-------CATTGA 897
.|.| ||.||| |||.||| ||||.|
BPUM_1872___r 875 TACGCATGAAAA--------AAACAGCGAATTCTCATTAA 906
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