Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03169 and BPUM_1871

See Amino acid alignment / Visit BSNT_03169 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:40
# Commandline: needle
#    -asequence dna-align/BSNT_03169.1.24716.seq
#    -bsequence dna-align/BPUM_1871.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03169-BPUM_1871.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03169-BPUM_1871.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03169
# 2: BPUM_1871
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 343
# Identity:     170/343 (49.6%)
# Similarity:   170/343 (49.6%)
# Gaps:         125/343 (36.4%)
# Score: 339.0
# 
#
#=======================================

BSNT_03169         1 ATG------GACAATGATAAAGAGATAGTGAAAGCCTA----TGCT--TC     38
                     |||      |.|||||                |||.||    ||||  ||
BPUM_1871          1 ATGTCATCAGCCAATG----------------AGCTTACAGCTGCTTATC     34

BSNT_03169        39 A--CTT--TGGAATAACCG--ATCTCTCGCACATGATGACGCAGAAGCGG     82
                     |  |||  |||||.||.||  |.||        |||||.|| |.||    
BPUM_1871         35 AATCTTTATGGAAAAATCGTCAGCT--------TGATGTCG-ATAA----     71

BSNT_03169        83 TAGCA-----------GAGGCGAT------TGATCTTGAGCTGTTG-GAT    114
                     ||..|           |||||.||      |||| ||.|| ||.|| |  
BPUM_1871         72 TATGACTTCTTTACTCGAGGCAATTTGTGATGAT-TTAAG-TGATGCG--    117

BSNT_03169       115 AAACGAACACATCCAA----GACTCCGAAAACCGATGCTGGAAAAATAT-    159
                        ||.||.|||||.|    ||    |||||.|..|.|...|||||||| 
BPUM_1871        118 ---CGCACTCATCCGAGGGCGA----GAAAATCATTCCATCAAAAATATG    160

BSNT_03169       160 --TTTGCCGCGATTCAGCGCA---------------TTGTGAAT--TCAC    190
                       .||||.|   |..||.|.|               |||.|.||  ||| 
BPUM_1871        161 TACTTGCTG---TAGAGAGAATATTAGAAAGTGGGCTTGGGCATGATCA-    206

BSNT_03169       191 AGCTCGAACCGGCTGTGAAATATCAGCTGGTCAAATTACATACAGAA---    237
                        ||.|     |||        ||||||.|||..|||||||||.||   
BPUM_1871        207 ---TCAA-----CTG--------CAGCTGATCAGCTTACATACAAAAAAG    240

BSNT_03169       238 -CGTGCAGAGTATTTAAAAGAAGAAAGAGGGGAGCAATCATGA    279
                      .|.||..|.||.||.||| |.|||.||.||.|.||.||||||
BPUM_1871        241 CTGCGCGAATTAATTCAAA-ATGAAGGAAGGAACCACTCATGA    282


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