Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03168 and BPUM_1870

See Amino acid alignment / Visit BSNT_03168 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:40
# Commandline: needle
#    -asequence dna-align/BSNT_03168___yojF.1.24716.seq
#    -bsequence dna-align/BPUM_1870.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03168___yojF-BPUM_1870.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03168___yojF-BPUM_1870.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03168___yojF
# 2: BPUM_1870
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 373
# Identity:     259/373 (69.4%)
# Similarity:   259/373 (69.4%)
# Gaps:          44/373 (11.8%)
# Score: 841.5
# 
#
#=======================================

BSNT_03168___      1 ATGAAAGCGATCATAAAA--GAAGATGT----GCAAGCATCTTTAGAA-C     43
                     ||||||.|.||  |.|||  ||||||||    |||  ||||||  ||| |
BPUM_1870          1 ATGAAACCAAT--TCAAACGGAAGATGTCACAGCA--CATCTT--GAATC     44

BSNT_03168___     44 G-----ATATGCGGACCGCCCTGTATATATCCATTTAGAAACCACCACAG     88
                     |     |.||      |||||.||.|...|.|||.|.|||||.||.||.|
BPUM_1870         45 GTTTTTAAAT------CGCCCAGTCTTCGTTCATCTTGAAACGACGACTG     88

BSNT_03168___     89 GTTCTTATTCAGCGCACTTAAATGAAAAGAACATGACGGTTGTTGCGTAT    138
                     |||||||||||||.||..||||||||.|.||.||||||||.|||||.|||
BPUM_1870         89 GTTCTTATTCAGCTCATGTAAATGAACAAAATATGACGGTCGTTGCCTAT    138

BSNT_03168___    139 ATTCGCAATGCAAAAGT--TACTTATCATCAGGCAAAAATCAAAGG-CAA    185
                     ||.||||||||.|||||  | ||..||| |||||||||||.||||| |||
BPUM_1870        139 ATCCGCAATGCGAAAGTCGT-CTATTCA-CAGGCAAAAATAAAAGGACAA    186

BSNT_03168___    186 CGGGCCTTACCGCGTTGGCTTGAAAACAGAAGAAGGCTGGATTTATGCTG    235
                      ||.||.|||||.|||||..|||||||||||||.||.||||||||.||.|
BPUM_1870        187 -GGTCCGTACCGTGTTGGAATGAAAACAGAAGATGGTTGGATTTACGCAG    235

BSNT_03168___    236 AAGGCTTGAC------TGAATACACGGTAGATGAAGAAAACCGTTTATTA    279
                     |||||||.||      |||||      |.|||||..||..|||.||..|.
BPUM_1870        236 AAGGCTTAACCGATTATGAAT------TTGATGACCAAGGCCGCTTGCTG    279

BSNT_03168___    280 ATGGCGGGACATCTGCCGGGCGGTAAACTGGCTATTTCTCTGCAAATCAG    329
                     .|.||.||.||..||||.|.|||.||.||.||.||.||..|.|||||.||
BPUM_1870        280 TTAGCAGGGCACTTGCCAGACGGGAAGCTAGCGATCTCATTACAAATTAG    329

BSNT_03168___    330 CGAAAAACCATTCACAGTTTAA-    351
                     .||||.|||||| .|||.|..| 
BPUM_1870        330 TGAAACACCATT-TCAGGTGTAG    351


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