Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03163 and BPUM_1868
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_03163___yojI.1.24716.seq
# -bsequence dna-align/BPUM_1868.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03163___yojI-BPUM_1868.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03163___yojI-BPUM_1868.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03163___yojI
# 2: BPUM_1868
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1453
# Identity: 954/1453 (65.7%)
# Similarity: 954/1453 (65.7%)
# Gaps: 185/1453 (12.7%)
# Score: 2899.0
#
#
#=======================================
BSNT_03163___ 1 ATGAAAGAAACTCAAAACGC--CCGGGAAAAAATCAAAC-AGCTCTTGCA 47
||||.||||| ||||..|| .||.|..||..|.|.|| | |.||..|
BPUM_1868 1 ATGAGAGAAA--CAAATAGCATTCGAGCTAAGGTGACACTA--TTTTTAA 46
BSNT_03163___ 48 C-ATTTTAATACCGATATTCATTACCCAAGCGGGGCTTTCTCTGATCACT 96
| ||.||.||.|||||.||.||.||.||||||||.|||||.||.||.||.
BPUM_1868 47 CTATGTTGATTCCGATTTTAATCACTCAAGCGGGTCTTTCGCTTATTACG 96
BSNT_03163___ 97 TTTCTAGATACTGTGATGTCAGGGAAAGTCAGCCCCGCTGATTTAGCTGG 146
|||.||||.||.||.|||||.||.|||||.||..|.|..||..|.||.||
BPUM_1868 97 TTTTTAGACACCGTCATGTCTGGAAAAGTGAGTGCAGAAGACCTTGCGGG 146
BSNT_03163___ 147 TGTCGCCATTGGCTCAAGCCTTTGGACCCCTGTTTACACAGGACTTGCAG 196
|||.||.||.||.||||||.|||||||.||.|||||.|||||||||||.|
BPUM_1868 147 TGTTGCGATCGGTTCAAGCATTTGGACACCCGTTTATACAGGACTTGCTG 196
BSNT_03163___ 197 GTATATTAATGGCGGTCACCCCGATTGTCGCTCAGTTACTAGGCGCAGAG 246
|||||||||||||.||.||.||.||||||||||||.|..|.|||||.|.|
BPUM_1868 197 GTATATTAATGGCCGTTACGCCAATTGTCGCTCAGCTGATGGGCGCGGGG 246
BSNT_03163___ 247 -AAAAAACAGAAGATTCCCTTTA----CTGTTTTACAAGC------TGTA 285
|.||||.|||.| |||| | ||||.||.||.|| |.||
BPUM_1868 247 CATAAAAAAGATG-TTCC----AAAGGCTGTCTTTCAGGCGATTTATTTA 291
BSNT_03163___ 286 TACGTGGCCGCGCTTCTT---AGCATCGCCGTTTTAGT--GATTGGATAT 330
| |||||||| ||.|| |.||.|.|.| |||||||
BPUM_1868 292 T---------CGCTTCTTTTAAGTAT--CTGTGTGATTACGATTGGA--- 327
BSNT_03163___ 331 GCTGCAGTTGAC--------CTTATT-------CTTGGCCGATTGAACCT 365
.||.|||.| |.|||| |||||.| |.||||
BPUM_1868 328 ---ACAATTGGCATCCCTTACGTATTAGAGGGACTTGGAC--TGGAAC-- 370
BSNT_03163___ 366 TGATATTCACGTGCATCAGATTGCTAAACACTTTTTAGGCTTTTTATCAC 415
|.|| |||..|..|.|||||..|.||.||.|||.|.|||.|..|..
BPUM_1868 371 ----AATC-CGTAGAGGATATTGCCCACCATTTCTTAAGTTTTCTTGCTT 415
BSNT_03163___ 416 TGGGAATTTTCCCTTTATTTGTTTACACCGTGTTGAGATCATTCATCGAC 465
|.||.|||.||||..|.||||.|||..|.|||.|.||.|||||.||.||.
BPUM_1868 416 TTGGTATTATCCCGCTGTTTGGTTATTCGGTGCTTAGGTCATTTATTGAT 465
BSNT_03163___ 466 TCATTAGGAAAAACGAGAGTCACCATGATGATTACACTCA-GTT-----C 509
.|||||||||||||..|.||.|| ||||.||| ||| ||| |
BPUM_1868 466 GCATTAGGAAAAACACGTGTAAC---GATGTTTA---TCACGTTAACAGC 509
BSNT_03163___ 510 TCTTCCAATCAATTTTGTATTGAATTATGTATTTATCTTCGGGAAGTTCG 559
.|||||.||.||.|||||.||.||.|||||||||||.||.|||||.||.|
BPUM_1868 510 ACTTCCGATTAACTTTGTGTTAAACTATGTATTTATTTTTGGGAATTTTG 559
BSNT_03163___ 560 GAATGCCGGCACTTGGAGGTGTAGGCGCGGGGCTGGCATCCGCGTTAACT 609
|..|.||....|||||.||||..||.||.||.||.||.||.|||.|.||.
BPUM_1868 560 GCTTTCCAAAGCTTGGCGGTGCGGGAGCTGGCCTTGCTTCTGCGATGACG 609
BSNT_03163___ 610 TACTGGTGTATCTGCATCATCAGTTTTTTCATTATTCATAAAAAC-GCAC 658
||.|||...||.|..|||||.|||.|||..||| .||||.|||.| |.||
BPUM_1868 610 TATTGGGCAATTTTTATCATGAGTATTTGTATT-GTCATGAAAGCAGAAC 658
BSNT_03163___ 659 CGTTT-TCTGAATACGGGATTTTTCT-------TACCATGTAT-AAGTTC 699
|.||| .||.|.|.| ||||.|.| |.||..|.|| ||..||
BPUM_1868 659 CCTTTGCCTCATTTC---ATTTGTTTCAAAAACTGCCTCGAATCAATATC 705
BSNT_03163___ 700 TC-----TTGGAAAGCATGCAAAAATTTGCTCAAAATCGGGCTGCCTATT 744
|| |.|| ||||| |.||.|||||.||.||.||||||
BPUM_1868 706 TCCCGTATGGG-------GCAAA----TACTGAAAATTGGTCTTCCTATT 744
BSNT_03163___ 745 GGGTTCGCCGTGTTTTTTGAAACGAGCATTTTCGCAGCTGTCACGCTTCT 794
|||||.||..|.||||||||||||||.||.||.||.|||||.|||.|..|
BPUM_1868 745 GGGTTTGCGATTTTTTTTGAAACGAGTATCTTTGCTGCTGTTACGTTATT 794
BSNT_03163___ 795 AATGAGCCATTTTCATACAGTGACCATCGC--GTCCCACCAGGCAGCCAT 842
||||.|.||.|||.||||.|||||.||.|| || ||||||||.||.||
BPUM_1868 795 AATGGGGCACTTTGATACTGTGACGATTGCAAGT--CACCAGGCCGCGAT 842
BSNT_03163___ 843 GAATTTTGCGTCTCTTTTATATATGCTGCCGCTTAGCGTGTCCATGGCTC 892
|||.|||||.||..|.||||||||..|.|||||.||..|.||.||||||.
BPUM_1868 843 GAACTTTGCTTCAATCTTATATATTTTACCGCTCAGTATCTCAATGGCTT 892
BSNT_03163___ 893 TAACAATTGTTGTCGGATTTGAAGCGGGTGC--AGCCCGTTTTAAGGATG 940
||||.|||||.||.||.||||||||.||||| || ||.|.|||.||||
BPUM_1868 893 TAACGATTGTCGTTGGGTTTGAAGCCGGTGCCAAG--CGCTATAAAGATG 940
BSNT_03163___ 941 C---ACGCTCATATAGCTTAATCGGCATCATGATGGCGATCGGC------ 981
| |.|| |||||||..|||||.|| || ||.||||
BPUM_1868 941 CGCAAAGC---TATAGCTATATCGGAAT-----TG--GAACGGCGGTATT 980
BSNT_03163___ 982 -TTTTCTTTGTTCACTGCCGCCTGTA-TCCTTTTATT--------CAGAG 1021
||.||.|||||.||.||.|| | ||.||||||| |||
BPUM_1868 981 ATTCTCCTTGTTTACGGCAGC----ACTCATTTTATTATTTAGACCAG-- 1024
BSNT_03163___ 1022 AGCAAATTGCGGGCATGTACACTTCTGACCCCGATGTGCTCCGGCTGACA 1071
|||||||.||..|.||.||..||||..|.|.|||..|.|.|||||||
BPUM_1868 1025 ---AAATTGCTGGTTTATATACAGCTGAATCGGCTGTTTTACAGCTGACA 1071
BSNT_03163___ 1072 CAGCACTTTTTAATTTATGCGCTATTTTTTCAGCTTTCCGATGCTGTTGC 1121
||||||||.||.|||||||||.|.|||||.|||||.||.|||||..||||
BPUM_1868 1072 CAGCACTTCTTGATTTATGCGATCTTTTTCCAGCTGTCAGATGCCATTGC 1121
BSNT_03163___ 1122 CGCACCGATCCAGGGAGCACTCAGAGGGTACAAAGATGTGAACTATACGC 1171
.|||||.|||||.||.||.||..|.||.||.|||||||||||||||||||
BPUM_1868 1122 TGCACCTATCCAAGGGGCGCTACGCGGCTATAAAGATGTGAACTATACGC 1171
BSNT_03163___ 1172 TTGCGGCCGCTTTTGTCTCTTACTGGGTCATTGGCCTTCCGGTCGGTTAT 1221
|....|||||.|||||.||.||||||||.||.||||||||...|||.|||
BPUM_1868 1172 TCATTGCCGCATTTGTTTCATACTGGGTGATCGGCCTTCCTTCCGGCTAT 1221
BSNT_03163___ 1222 ATGGTCGGTACGTTTACAAGCCTC----GGTGCATTCGGCTATTGGATTG 1267
.||.|.||.||.|.|| |||| ||.||||||||.||||||||||
BPUM_1868 1222 CTGATTGGCACCTATA----CCTCGTATGGGGCATTCGGGTATTGGATTG 1267
BSNT_03163___ 1268 GATTAATAGCGGGACTCGCCGCCGGAGCAGTTGGGCTGTTTTTCAGGCTG 1317
|..|.||.||.|||||.||.||.||.||.||||..||.|||.||.|.||
BPUM_1868 1268 GTCTCATTGCAGGACTTGCAGCAGGTGCTGTTGTCCTCTTTATCCGTCT- 1316
BSNT_03163___ 1318 GCAAA---ACTGCAAAAACGTT--ATTCGCAAAAACAA---CACATT--- 1356
||.| | ||.||||||||| .||| |.||| |.||.|
BPUM_1868 1317 -CAGATTGA-TGGAAAAACGTTTGCTTC-----AGCAAGCGCCCAGTCAC 1359
BSNT_03163___ 1357 TAA 1359
|||
BPUM_1868 1360 TAA 1362
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