Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03162 and BPUM_1867
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:39
# Commandline: needle
# -asequence dna-align/BSNT_03162___yojJ.1.24716.seq
# -bsequence dna-align/BPUM_1867.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03162___yojJ-BPUM_1867.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03162___yojJ-BPUM_1867.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03162___yojJ
# 2: BPUM_1867
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 680
# Identity: 421/680 (61.9%)
# Similarity: 421/680 (61.9%)
# Gaps: 130/680 (19.1%)
# Score: 1223.5
#
#
#=======================================
BSNT_03162___ 1 ATGCGCTATGAGCAGATATC----------AGAA----AATGCGTTCAAG 36
||||.|| ||| |||| ||| ||.|||
BPUM_1867 1 -------ATGATCA---ATCGTACAAATGAAGAAGCACAAT---TTAAAG 37
BSNT_03162___ 37 GG-----GAAAATACAGGTGTACCTAGAGCAAATATTAGG--TGATGCA- 78
.| ||.||.||| ||.||..||| ||||.| .||||||
BPUM_1867 38 TGGGTATGAGAACACA-------CTTGATGAAA-ATTATGAAAGATGCAA 79
BSNT_03162___ 79 -------TCTCTAATCTTGAAAACGCTTCACGAAAAAGACCAGTGTCTCC 121
|.||.|.||| |||.|.||||..||.||.|||||.|
BPUM_1867 80 GTGACATTATCGATTCT--------CTTGATGAAATTGAGCAATGTCTAC 121
BSNT_03162___ 122 TTTGTGA---------ATTAGATGATTTGGGGCACGTTTTTCAGGA---- 158
||||||| ||||.||||| |..|||.|.||
BPUM_1867 122 TTTGTGATCTTGAGTCATTACATGAT---------GAGTTTAATGAAATG 162
BSNT_03162___ 159 CATGCAGGGGATTGCATCCTCCTTTTATTTGCAATCATACATTGAGGAAT 208
|||||||.| ||.|||||.||||||||||||||.||.||.||.||||
BPUM_1867 163 CATGCAGAG----GCTTCCTCGTTTTATTTGCAATCGTATATGGAAGAAT 208
BSNT_03162___ 209 TTACGCCGGCATTTATTGAGCTGGCCAA--------GGCGATTAAAGCCT 250
..||.||.|.|||| ||| ||| .||.|||.||..||
BPUM_1867 209 ACACACCCGGATTT-----GCT---CAATTTTCGTTAGCCATTGAAAACT 250
BSNT_03162___ 251 TATCGGAACATAAGCATGGAGCTTTAATTGTGATTGAAAGAGC-AGACCC 299
||||..||||.||.||.||.||.||.|||||||||.|||| || .||...
BPUM_1867 251 TATCAAAACAAAAACACGGGGCATTGATTGTGATTCAAAG-GCGGGATGA 299
BSNT_03162___ 300 GGTTGAACGTTTTATTCAAAAAGGCACCTCCCTACACGCCGAGATCAGCT 349
||||||...|||||||||||.|||.||....||.||.||..|.||.||..
BPUM_1867 300 GGTTGAGGATTTTATTCAAAGAGGGACAAATCTTCATGCGAAAATAAGTG 349
BSNT_03162___ 350 CTTCATTAATTGAAAGCATCTTTTTTCCC-GGAAACCCTCTTCATGACG- 397
|.||||||||||||||||| |||.|.||| |||||.||.||||||||.|
BPUM_1867 350 CATCATTAATTGAAAGCAT-TTTCTACCCAGGAAATCCACTTCATGATGG 398
BSNT_03162___ 398 -GCGCTTTATTAGTGAGGGAAAACAAACTCGTGTCAGCAGCCAATGTGCT 446
|||||| |||||.|..|||||.|..|||||.||.||.||.||||||||
BPUM_1867 399 TGCGCTT--TTAGTCAAAGAAAATACGCTCGTATCTGCGGCAAATGTGCT 446
BSNT_03162___ 447 CCCGCTGACGAC-GAAGGAAGT--GGATATCCATT---TGGGAACCCGGC 490
.||.||.||..| .||..|||| | ||| || |.||.||..|.|
BPUM_1867 447 GCCACTTACTTCAAAAAAAAGTCAG----TCC-TTCTCTCGGGACAAGAC 491
BSNT_03162___ 491 ACCGGGCGGCTCTCGGTATGTCGGGCTAT-ACGGATGCACTGGTGCTCGT 539
||.|.||.||..|.||..|.||.||| || ||.||||||||.||.|||||
BPUM_1867 492 ACAGAGCTGCGATTGGACTCTCTGGC-ATGACCGATGCACTTGTTCTCGT 540
BSNT_03162___ 540 GGTTTCAGAGGAAACAGGTAAGATGTCGTTTGCCAAAGACGGTGTATTAT 589
.|||||||||||||||||.||.|||||.|||||.|||||.||.||..|.|
BPUM_1867 541 CGTTTCAGAGGAAACAGGGAAAATGTCATTTGCGAAAGAAGGCGTCCTTT 590
BSNT_03162___ 590 ATCCGTTAATTTCAC----CAAGAACGTAA 615
||||| .|||| .||||.|.|.|
BPUM_1867 591 ATCCG-----CTCACTGTAAAAGAGCCTGA 615
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