Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03157 and BPUM_1865

See Amino acid alignment / Visit BSNT_03157 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:39
# Commandline: needle
#    -asequence dna-align/BSNT_03157___yojM.1.24716.seq
#    -bsequence dna-align/BPUM_1865___yojM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03157___yojM-BPUM_1865___yojM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03157___yojM-BPUM_1865___yojM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03157___yojM
# 2: BPUM_1865___yojM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 704
# Identity:     363/704 (51.6%)
# Similarity:   363/704 (51.6%)
# Gaps:         196/704 (27.8%)
# Score: 856.5
# 
#
#=======================================

BSNT_03157___      1 ------------------------------------------ATG-CACC      7
                                                               ||| .|..
BPUM_1865___y      1 TTGATCAGGTTGTCCATACTGATATCAAAAGGGGGCAATCATATGAAAAA     50

BSNT_03157___      8 GTC--TCTTGCTGTTGATGATG---CTG------------ACGGCACTGG     40
                     |||  |.|.|.||.|.||||||   |||            ||.|||    
BPUM_1865___y     51 GTCAGTGTGGTTGATCATGATGTGTCTGGTTTTTGTCACAACAGCA----     96

BSNT_03157___     41 GAGTTGCCGGAT-----GCGGACAAAAAAAACCTCCAGACCCTCCTAACC     85
                         ||.|  ||     ||.||.||||.||||                  
BPUM_1865___y     97 ----TGTC--ATGCACCGCCGAAAAAAGAAAC------------------    122

BSNT_03157___     86 GGGTGCCGGAAAAAA------AAGTGGTTG-----AAAC--GTCAGCGTT    122
                         |.|.|||.|||      ||||.|..|     ||||  | ||.|   
BPUM_1865___y    123 ----GACAGAAGAAACCATTGAAGTTGCAGCACCTAAACAAG-CACC---    164

BSNT_03157___    123 TGGTCATCATGTCCAGCTGGTCAATCGTGAA---GGGAAAGCAGTCGGTT    169
                      |||.|.||.| |||    .|||.|..||||   |||.||..|.|.||  
BPUM_1865___y    165 -GGTTACCACG-CCA----CTCATTAATGAAAGCGGGCAAAAAATAGG--    206

BSNT_03157___    170 TTATAGAG-ATCAAAGAA---------TCAGATGATGAAGGCCTCGATAT    209
                          ||| |||.|||.|         |||||..||   ||.||.|||.|
BPUM_1865___y    207 -----GAGTATCGAAGTAAGAGACTCCTCAGAAAAT---GGGCTGGATTT    248

BSNT_03157___    210 TCATATTTCCGCAAACAGCCTGCGTCCAGGTGCTTCTCTCGGTTTTCATA    259
                     .|||.|....|||||.|..||||..|||||   |.|||..||.||.||||
BPUM_1865___y    249 ACATGTGAAAGCAAAAAATCTGCCGCCAGG---TCCTCATGGCTTCCATA    295

BSNT_03157___    260 TTTATGAGAAAGGTTCTTGTGTCAGGCCGGATTTTGAATCAGCGGGCGGT    309
                     ||.|.||.|.|||....||||..|.|||.|||||||||.|.||.||.|.|
BPUM_1865___y    296 TTCACGAAACAGGAAGATGTGAAACGCCAGATTTTGAAACGGCAGGGGCT    345

BSNT_03157___    310 CCCTTTAATCCACTGAACAAA----GAACACGGCTTCAATAATCCGATGG    355
                     |.|||||||||    .|||.|    ||.||.|||||..||||.||.|.||
BPUM_1865___y    346 CACTTTAATCC----CACACACCGGGAGCATGGCTTTGATAACCCAAAGG    391

BSNT_03157___    356 GGCATCATGCCGGAGATCTGCCGAACCTTGAAGTCGGTGCTGATGGAAAG    405
                     |.||.|||||.||||||.||||.||..|.||.||.||.||.||||||.|.
BPUM_1865___y    392 GCCACCATGCTGGAGATATGCCTAATTTAGAGGTTGGGGCAGATGGACAA    441

BSNT_03157___    406 GTAGATGTCATAATGAATGCGCC-----TGACACTTCACTGAAAAAAGGA    450
                     .|.||.||..|..||||||..||     ||||..|         |||||.
BPUM_1865___y    442 ATTGACGTTGTCGTGAATGTACCAGATGTGACGTT---------AAAGGG    482

BSNT_03157___    451 AG---TAAACTAAATATTCTCGACGAGGACGGAAGTGCA--TTTATTATT    495
                     ||   |.|||.||.||  .||||..|..|.||  |.|||  |||||.|||
BPUM_1865___y    483 AGGAATGAACCAATTA--ATCGATCAAAATGG--GCGCAGCTTTATCATT    528

BSNT_03157___    496 CATGAACAAGCGGACGATTATCTGACAAACCCAAGCGGCAATTCCGGTGC    545
                     ||||.|.||||.||.|||||..|.|..|||||....||.||.||.||...
BPUM_1865___y    529 CATGCAGAAGCAGATGATTACTTAAGCAACCCTTCTGGAAACTCAGGGAA    578

BSNT_03157___    546 GCGTATTGTCTGCGGAGCCCTTTTGGGAAATAACGAGAAGCA---GTAA-    591
                     .||.||.|.|||||||||          |||.|| |.|||.|   |||| 
BPUM_1865___y    579 ACGCATCGCCTGCGGAGC----------AATCAC-AAAAGAAATGGTAAA    617

BSNT_03157___    591 ----    591
                         
BPUM_1865___y    618 ATAA    621


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