Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03157 and BPUM_1865
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:39
# Commandline: needle
# -asequence dna-align/BSNT_03157___yojM.1.24716.seq
# -bsequence dna-align/BPUM_1865___yojM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03157___yojM-BPUM_1865___yojM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03157___yojM-BPUM_1865___yojM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03157___yojM
# 2: BPUM_1865___yojM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 704
# Identity: 363/704 (51.6%)
# Similarity: 363/704 (51.6%)
# Gaps: 196/704 (27.8%)
# Score: 856.5
#
#
#=======================================
BSNT_03157___ 1 ------------------------------------------ATG-CACC 7
||| .|..
BPUM_1865___y 1 TTGATCAGGTTGTCCATACTGATATCAAAAGGGGGCAATCATATGAAAAA 50
BSNT_03157___ 8 GTC--TCTTGCTGTTGATGATG---CTG------------ACGGCACTGG 40
||| |.|.|.||.|.|||||| ||| ||.|||
BPUM_1865___y 51 GTCAGTGTGGTTGATCATGATGTGTCTGGTTTTTGTCACAACAGCA---- 96
BSNT_03157___ 41 GAGTTGCCGGAT-----GCGGACAAAAAAAACCTCCAGACCCTCCTAACC 85
||.| || ||.||.||||.||||
BPUM_1865___y 97 ----TGTC--ATGCACCGCCGAAAAAAGAAAC------------------ 122
BSNT_03157___ 86 GGGTGCCGGAAAAAA------AAGTGGTTG-----AAAC--GTCAGCGTT 122
|.|.|||.||| ||||.|..| |||| | ||.|
BPUM_1865___y 123 ----GACAGAAGAAACCATTGAAGTTGCAGCACCTAAACAAG-CACC--- 164
BSNT_03157___ 123 TGGTCATCATGTCCAGCTGGTCAATCGTGAA---GGGAAAGCAGTCGGTT 169
|||.|.||.| ||| .|||.|..|||| |||.||..|.|.||
BPUM_1865___y 165 -GGTTACCACG-CCA----CTCATTAATGAAAGCGGGCAAAAAATAGG-- 206
BSNT_03157___ 170 TTATAGAG-ATCAAAGAA---------TCAGATGATGAAGGCCTCGATAT 209
||| |||.|||.| |||||..|| ||.||.|||.|
BPUM_1865___y 207 -----GAGTATCGAAGTAAGAGACTCCTCAGAAAAT---GGGCTGGATTT 248
BSNT_03157___ 210 TCATATTTCCGCAAACAGCCTGCGTCCAGGTGCTTCTCTCGGTTTTCATA 259
.|||.|....|||||.|..||||..||||| |.|||..||.||.||||
BPUM_1865___y 249 ACATGTGAAAGCAAAAAATCTGCCGCCAGG---TCCTCATGGCTTCCATA 295
BSNT_03157___ 260 TTTATGAGAAAGGTTCTTGTGTCAGGCCGGATTTTGAATCAGCGGGCGGT 309
||.|.||.|.|||....||||..|.|||.|||||||||.|.||.||.|.|
BPUM_1865___y 296 TTCACGAAACAGGAAGATGTGAAACGCCAGATTTTGAAACGGCAGGGGCT 345
BSNT_03157___ 310 CCCTTTAATCCACTGAACAAA----GAACACGGCTTCAATAATCCGATGG 355
|.||||||||| .|||.| ||.||.|||||..||||.||.|.||
BPUM_1865___y 346 CACTTTAATCC----CACACACCGGGAGCATGGCTTTGATAACCCAAAGG 391
BSNT_03157___ 356 GGCATCATGCCGGAGATCTGCCGAACCTTGAAGTCGGTGCTGATGGAAAG 405
|.||.|||||.||||||.||||.||..|.||.||.||.||.||||||.|.
BPUM_1865___y 392 GCCACCATGCTGGAGATATGCCTAATTTAGAGGTTGGGGCAGATGGACAA 441
BSNT_03157___ 406 GTAGATGTCATAATGAATGCGCC-----TGACACTTCACTGAAAAAAGGA 450
.|.||.||..|..||||||..|| ||||..| |||||.
BPUM_1865___y 442 ATTGACGTTGTCGTGAATGTACCAGATGTGACGTT---------AAAGGG 482
BSNT_03157___ 451 AG---TAAACTAAATATTCTCGACGAGGACGGAAGTGCA--TTTATTATT 495
|| |.|||.||.|| .||||..|..|.|| |.||| |||||.|||
BPUM_1865___y 483 AGGAATGAACCAATTA--ATCGATCAAAATGG--GCGCAGCTTTATCATT 528
BSNT_03157___ 496 CATGAACAAGCGGACGATTATCTGACAAACCCAAGCGGCAATTCCGGTGC 545
||||.|.||||.||.|||||..|.|..|||||....||.||.||.||...
BPUM_1865___y 529 CATGCAGAAGCAGATGATTACTTAAGCAACCCTTCTGGAAACTCAGGGAA 578
BSNT_03157___ 546 GCGTATTGTCTGCGGAGCCCTTTTGGGAAATAACGAGAAGCA---GTAA- 591
.||.||.|.||||||||| |||.|| |.|||.| ||||
BPUM_1865___y 579 ACGCATCGCCTGCGGAGC----------AATCAC-AAAAGAAATGGTAAA 617
BSNT_03157___ 591 ---- 591
BPUM_1865___y 618 ATAA 621
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