Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03154 and BPUM_1863
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:39
# Commandline: needle
# -asequence dna-align/BSNT_03154___yojO.1.24716.seq
# -bsequence dna-align/BPUM_1863___yojO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03154___yojO-BPUM_1863___yojO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03154___yojO-BPUM_1863___yojO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03154___yojO
# 2: BPUM_1863___yojO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2009
# Identity: 1392/2009 (69.3%)
# Similarity: 1392/2009 (69.3%)
# Gaps: 184/2009 ( 9.2%)
# Score: 4623.0
#
#
#=======================================
BSNT_03154___ 1 ATGAAATTTATCAAATTTAACGACAGCACGATTGATTCATTTTTATTTAT 50
.|||||||.|||||||||||.|||||||..||.|||||||||||||||||
BPUM_1863___y 1 TTGAAATTCATCAAATTTAATGACAGCAGAATCGATTCATTTTTATTTAT 50
BSNT_03154___ 51 G--ATGCTGACTGATTTGGCCAAAACACTCACCAAGAGTGAAGCGGTAGA 98
| || |.||.|||||.||||||||..|..|.||.|||||.|..||.||
BPUM_1863___y 51 GGAAT--TAACGGATTTAGCCAAAACGTTAGCGAAAAGTGATGATGTCGA 98
BSNT_03154___ 99 AGTGGAGTATGGCGTTCAGTCCTATTACAATCCATTTGAAAAGAAAATCT 148
..|.||.||||||||.||||||||.||..||||.||||||||||||||.|
BPUM_1863___y 99 GCTTGAATATGGCGTGCAGTCCTACTATGATCCTTTTGAAAAGAAAATTT 148
BSNT_03154___ 149 ATATGAGCCACTTTTGGAAAGACAGGGCAGCTGAGGACATGGAAGCGGGT 198
..||.||.||.||||||.|.|||.|...|...||.||||||..|||.||.
BPUM_1863___y 149 TCATCAGTCATTTTTGGGATGACCGTAAACAAGAAGACATGACAGCTGGG 198
BSNT_03154___ 199 CTGAAAAGCGACGTCTACCTGCGTTCAGTCGGAACAAGATATA--GCTCG 246
||||||||.||.||.|.|||.||..||||.||.||....|||| |.||
BPUM_1863___y 199 CTGAAAAGTGATGTATTCCTCCGAGCAGTAGGTACCGTTTATAGTGATC- 247
BSNT_03154___ 247 CTGCATGAGTTTGCGAACTTTTTGAATGATATCCATCGTCAT-CTCA--- 292
|||||.| |||| .|.||.|||..|||..|| ||||
BPUM_1863___y 248 -----TGAGTGT-----CTTT---CAAGAAATCATTCGCTATGCTCACAC 284
BSNT_03154___ 293 ------CCTTTAAAAGTTTTGCCAAGCAGCTCTTTATGCTGCTTGAAGAC 336
|.||..|.|.||.|| .||.|||.|.||||||||..|||||||.
BPUM_1863___y 285 AATATCCATTCCAGATTTGTG-TAAACAGTTATTTATGCTCTTTGAAGAT 333
BSNT_03154___ 337 ATTAGGATCGAAGAATGCATCAAACGTGAGCGTCCGGGTACGAAACATGT 386
||..||||.|||||..|.||.||||||||.|||||.||.||.|||.|.||
BPUM_1863___y 334 ATCCGGATTGAAGAGCGGATTAAACGTGAACGTCCAGGAACAAAAAAGGT 383
BSNT_03154___ 387 ATTTGCGAAGCGAA-AAGACA--TGTACAGAAAACATTT-----CTCAAC 428
|||| ||.|||| ||||.| |||||.|....||||| |.|||
BPUM_1863___y 384 ATTT---AAACGAAGAAGAGAACTGTACCGGCGTCATTTTAAGACGCAA- 429
BSNT_03154___ 429 CCAGCTGACCTTAA--ATT----TGGAACGAAGCATTTTTACCGATGCGC 472
|||| ||| ..||.||.||||||||.||.|||||.|
BPUM_1863___y 430 ----------TTAACGATTAACCAAGAGCGGAGCATTTTAACAGATGCAC 469
BSNT_03154___ 473 TCTTTTGCGCGATCTATGTCAAGCTCACAGCGGAATCGCCGCTCG-AGAC 521
|.|.|||.||.||.|||||.|||||.|||||.||.||||||||.| |||
BPUM_1863___y 470 TTTATTGTGCAATGTATGTGAAGCTGACAGCAGATTCGCCGCTGGAAGA- 518
BSNT_03154___ 522 CCTTCCATCCATGCGTGAAGATATCGATCTGATGCGCCCGTTTATTGAGC 571
..||||..|..|.|..||..|.|||.|.|..|||...|||||||||||
BPUM_1863___y 519 AATTCCGCCTCTTCACGAGCAAATCAACCCAATGATTCCGTTTATTGA-- 566
BSNT_03154___ 572 AGCA--GCTCTTGCGTGTGTATGAAGCAGATTCGACACG--------GCA 611
|.|| .|||..||||||.||||||||..||||.|| || |||
BPUM_1863___y 567 ATCAAGTCTCGAGCGTGTTTATGAAGCGCATTCAAC-CGGAGATATCGCA 615
BSNT_03154___ 612 GGTTCTGAAAATTGTTGAGGACCTCATGGACGGACTTGAAGAGGTACTCG 661
| || |||||..|.||..|.|||||.||..||||.|||.|.||.|
BPUM_1863___y 616 G--TC-----ATTGTCAAAGAATTAATGGAAGGTTTTGATGAGCTTCTTG 658
BSNT_03154___ 662 ATAAAGACATGTTGAACACCTACTTCTTTTTGCCTGAGCTTGATTACGCA 711
|||||||.|||.||||.||.|||||.||.||.||.||..|.|||||.|.|
BPUM_1863___y 659 ATAAAGATATGCTGAATACGTACTTTTTCTTCCCCGAATTGGATTATGAA 708
BSNT_03154___ 712 AAAGCTGCAGAACAGCCGTTATTTGAAGAAGAGAAA---AAAGCGCCGAA 758
|||||.|||.||.|.|||.|||||.|.||...|||| ||| ||.||
BPUM_1863___y 709 AAAGCGGCAAAAGAACCGCTATTTCATGACTTGAAAAGGAAA---CCTAA 755
BSNT_03154___ 759 GCTGAGTGATGACATCA----CGCTTCC---AAAACAATCAGACGGTGAT 801
..|.|||||.||||||| || .|| |||| |||.||||||
BPUM_1863___y 756 ATTAAGTGAGGACATCAAAGTCG--ACCGGGAAAA-----AGAGGGTGAT 798
BSNT_03154___ 802 GAGGATATCCATGAAGA------AGAAATGCCGACATGGCACCGGGAAAC 845
||.||.|||||.||||| .|||.|| ||||||||||||||
BPUM_1863___y 799 GAAGACATCCACGAAGAGTATATGGAAGTG------TGGCACCGGGAAAC 842
BSNT_03154___ 846 AGAAGCACCGTCTAAAAGCTTCCTTCAATTTGATATTGAACACGGCGCAA 895
|||.||.||.||.|||||||||||||||||||||.|.||.|||||||..|
BPUM_1863___y 843 AGAGGCCCCATCAAAAAGCTTCCTTCAATTTGATTTAGAGCACGGCGGGA 892
BSNT_03154___ 896 AATCAGATTTAGGAAAAGATGCTTCAAGGGAAGGCGACGATGGAGATCAG 945
||...|||.|.||.||.|||||..||||.||||||||.||.||||||||.
BPUM_1863___y 893 AAAGTGATCTCGGGAAGGATGCAGCAAGAGAAGGCGATGACGGAGATCAA 942
BSNT_03154___ 946 GCCCTTGGCTCTGTTCAAGGATCAGCCAGACAAACGAAACGGAAAGACTA 995
||.||||||.||||.|||||.||.||||..||.||..|.||.|||||.||
BPUM_1863___y 943 GCACTTGGCACTGTCCAAGGCTCTGCCAAGCAGACTCATCGAAAAGATTA 992
BSNT_03154___ 996 TTCCAAGCTGGAAGCGCTG---GAGTCTCAAAAAGACCAGCCGAA----- 1037
|||.|||||.||.|||||| |||.||.| ||.||||
BPUM_1863___y 993 TTCAAAGCTTGAGGCGCTGGAAGAGGCTGA--------AGGCGAAGAAAG 1034
BSNT_03154___ 1038 CGGAGCGGGTATGGCT------GACGGCAAAGAAAATAAATATGCATTTC 1081
|||.||||.| ||| .|.||.|||||.||.|||||||||||||
BPUM_1863___y 1035 CGGGGCGGAT---GCTCATGAGAATGGAAAAGAGAACAAATATGCATTTC 1081
BSNT_03154___ 1082 CA------ATTTATAAAGAACCGCAGCCG-GCAACCAGTG-AAGAGGAGC 1123
|| ||||....||||||.| ||| | ||||.| ||...||
BPUM_1863___y 1082 CAGTCATGATTTCACCAGAACCTC--CCGCG---CCAGAGCAAATCGA-- 1124
BSNT_03154___ 1124 TTTCTTAT--AAACAGCAGGCAAAAACGATTGAATCGTATCAAAAGCGTT 1171
|.||| ||||||||.||.||...||||||..|.|||||.||.||..
BPUM_1863___y 1125 ---CGTATACAAACAGCATGCCAAGGAGATTGAGCCTTATCAGAAACGGC 1171
BSNT_03154___ 1172 TGAAACAAATGATTCAAAAAACGCTTGAACATAAAAAAACATTGCCGAGA 1221
|.|||||.|||||||||||||||||.||||||||||||||||.|||.|.|
BPUM_1863___y 1172 TAAAACAGATGATTCAAAAAACGCTCGAACATAAAAAAACATGGCCAAAA 1221
BSNT_03154___ 1222 ACAGATCTTCATGCCGGGAGACTGAATAATAAGCTTCTTCGTTACTTCAC 1271
||.|||||||||||.||..||||||.|||.|||||..|||||||.||.||
BPUM_1863___y 1222 ACGGATCTTCATGCAGGACGACTGAGTAAAAAGCTCATTCGTTATTTTAC 1271
BSNT_03154___ 1272 TGAGCGAAATCCGCGCCTGTTCTACAAAAAGCAAGAACCGTCTACAGAAA 1321
.|||..|||||||||.||.|||||.|||||.||.|.|||.|||||.||.|
BPUM_1863___y 1272 AGAGTCAAATCCGCGTCTCTTCTATAAAAAACAGGCACCTTCTACGGAGA 1321
BSNT_03154___ 1322 TCGACGCAGTTTTTACATTGCTGGTCGATTGTTCCGCCAGCATGTTCGAC 1371
|.||.||.||.||.||.||..|.||.||||||||.|||||||||||.|||
BPUM_1863___y 1322 TTGATGCTGTGTTCACTTTATTAGTGGATTGTTCTGCCAGCATGTTTGAC 1371
BSNT_03154___ 1372 AAAATGGACGAAACAAAACGAGGAATCGTGTTGTTTCACGAAGCGCTGAA 1421
||.||||||||.||.|||..|||.||.||.||.|||||.||||| ||.||
BPUM_1863___y 1372 AAGATGGACGAGACGAAAAAAGGCATTGTTTTATTTCATGAAGC-CTTAA 1420
BSNT_03154___ 1422 A-TCGGTAGCGGTTCCGCATCAGATTGTCGGTTTTTGGGAGGACACAAAT 1470
| ||.||....||.||.|||||.|||||.||.||||||||.||.|||||.
BPUM_1863___y 1421 AGTCCGTTCAAGTCCCACATCAAATTGTGGGGTTTTGGGAAGATACAAAC 1470
BSNT_03154___ 1471 GATGCAACCGAAACAAGCCAGCCAAACTATTTCAATACGGTTATTCCCTT 1520
||||||.|.||||||||.|||||.||||||||.||.||.||..|..|.||
BPUM_1863___y 1471 GATGCATCAGAAACAAGTCAGCCGAACTATTTTAACACAGTCGTGTCGTT 1520
BSNT_03154___ 1521 CCAA---TCATCATTAAGACAAGATTCTGGACCGGCCATTATGCAGCTTG 1567
|.|| ||.|.||| .|||.|.||.||..||||.|||...||||
BPUM_1863___y 1521 CAAAGATTCTTTATT------TGATGCAGGCCCTTCCATCATGTCTCTTG 1564
BSNT_03154___ 1568 AGCCAGAAGAAGATAACCGTGACGGGTACGCAATTAGGCAGATGACGAAA 1617
|.||.|||||.|||||.||.||.||.||.||.|||.|.||.||||| |
BPUM_1863___y 1565 AACCGGAAGAGGATAATCGGGATGGCTATGCGATTCGCCAAATGAC---A 1611
BSNT_03154___ 1618 AAAATGCTGCAT-----CGCAGCGAGGCGCAAAAGTTCTTAATTGTTTTC 1662
||||||.| || .|.||.||.|.|||||||||..|.|||||.||.
BPUM_1863___y 1612 AAAATGAT--ATTAAAAAGAAGAGAAGAGCAAAAGTTTCTCATTGTATTT 1659
BSNT_03154___ 1663 TCAGATGGAGAGCCGGCCGCATTTGGCTACGAACAAAATGGGATCGTTGA 1712
||.||||||||.|||||.|||||..||||||||||||||||||||||.||
BPUM_1863___y 1660 TCTGATGGAGAACCGGCTGCATTCAGCTACGAACAAAATGGGATCGTCGA 1709
BSNT_03154___ 1713 TACAAGTGAGGCGGTTATCGAAGCCCGAAAAAGAGGAATAGAAGTGATAA 1762
||||..|||.||.|||.|.||.||..|.||||.|||.||.||.||.||.|
BPUM_1863___y 1710 TACACATGAAGCAGTTCTTGAGGCGAGGAAAAAAGGCATTGAGGTCATCA 1759
BSNT_03154___ 1763 ATGTTTTTCTCTCCAACTCAGAAATAGAAGAATCGCAAATGAAGACGATC 1812
||||.|||.|.|||||.|||...||.||||||.||||.|||||.|||||.
BPUM_1863___y 1760 ATGTGTTTTTATCCAATTCACCGATCGAAGAAGCGCAGATGAAAACGATT 1809
BSNT_03154___ 1813 CAGGATATGTACGGAAAATTCAGTATATTTGTCCCGGATGTTGAT-CAGC 1861
||.||||||||.||.||.|||||.||.|||||.||.|||||.||| || .
BPUM_1863___y 1810 CAAGATATGTATGGCAAGTTCAGCATTTTTGTACCAGATGTCGATACA-T 1858
BSNT_03154___ 1862 TACCGGATGTTTTGTATCCGCTGCTGAAAAAACTGCTTCATAAAAGCATA 1911
|.||.||||||||.||||||.|.|||||.|||.|.||.|||||||||||.
BPUM_1863___y 1859 TGCCAGATGTTTTATATCCGTTACTGAAGAAATTACTGCATAAAAGCATT 1908
BSNT_03154___ 1912 GG---ATAG 1917
|| |||.
BPUM_1863___y 1909 GGGGCATAA 1917
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