Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03152 and BPUM_1861
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:38
# Commandline: needle
# -asequence dna-align/BSNT_03152___odhB.1.24716.seq
# -bsequence dna-align/BPUM_1861___odhB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03152___odhB-BPUM_1861___odhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03152___odhB-BPUM_1861___odhB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03152___odhB
# 2: BPUM_1861___odhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1319
# Identity: 958/1319 (72.6%)
# Similarity: 958/1319 (72.6%)
# Gaps: 127/1319 ( 9.6%)
# Score: 3534.0
#
#
#=======================================
BSNT_03152___ 1 ATGGCGGAAATTAAGGTACCTGAATTAGCAGAATCAATCTCAGAAGGAAC 50
||||||||||||||.||||||||||||||.|||||.|||||.||||||||
BPUM_1861___o 1 ATGGCGGAAATTAAAGTACCTGAATTAGCGGAATCGATCTCGGAAGGAAC 50
BSNT_03152___ 51 AATAGCCCAATGGTTAAAGCAGCCTGGTGACTATGTAGAACAGGGTGAAT 100
.|||||.||||||.|.||||||||.||.||.|||||.||||||||.||||
BPUM_1861___o 51 GATAGCTCAATGGCTCAAGCAGCCGGGCGATTATGTGGAACAGGGAGAAT 100
BSNT_03152___ 101 ATCTGCTTGAACTAGAAACGGATAAAGTGAATGTTGAATTGACAGCAGAA 150
|.|||.|.||.||.|||||.||||||||.|||||.|||.|||||||.|||
BPUM_1861___o 101 ACCTGTTAGAGCTTGAAACAGATAAAGTCAATGTCGAACTGACAGCCGAA 150
BSNT_03152___ 151 GAATCGGGTGTACTTCAAGAGGTATTGAAAGATTCGGGTGATACCGTCCA 200
|||||.||||||||..||||.||..||||||||||.|||||.||.||.||
BPUM_1861___o 151 GAATCTGGTGTACTCAAAGAAGTGCTGAAAGATTCTGGTGACACTGTACA 200
BSNT_03152___ 201 GGTCGGAGAAATTATCGGTACGATTTCAGAAGGCGCGGGTGAA------- 243
.||.||||||.|.|||||.||.|||.|| |||||||||
BPUM_1861___o 201 AGTTGGAGAAGTCATCGGAACAATTGCA------GCGGGTGAAGCTGGCG 244
BSNT_03152___ 244 ------AGTTCTGCCCCTGCTCCTACAGAGAAAGCA---GAAAGCAAGGA 284
||| ||.|.||||| |||| | ||||||
BPUM_1861___o 245 GAAGCGAGT----CCGCAGCTCC---------AGCACCTG--AGCAAG-- 277
BSNT_03152___ 285 AAG-------------CGTAAAAGAAGAGAAACAGGCTGAACCAGCTGCA 321
|| || |||||.| |||.|||| |||||.
BPUM_1861___o 278 -AGTCTGCACCAGCTCCG--AAAGATG---AACCGGCT------GCTGCT 315
BSNT_03152___ 322 CAAGAGGTGAGCGAGGAAGCA---CAATCTGAAG---CAAAATC------ 359
||| |..||.|||||| .|| |||| |.|||||
BPUM_1861___o 316 CAA------AAAGAAGAAGCAGTGAAA---GAAGAGCCGAAATCTGGTAA 356
BSNT_03152___ 360 ---AAGAACGATCGCTTCTCCGTCGGCCCGTAAGCTGGCGAGAGAAAAAG 406
.|||||.|||||||||||..|.||..|.||.||.||||||||.||.|
BPUM_1861___o 357 TGGCAGAACCATCGCTTCTCCTGCAGCTAGAAAACTAGCGAGAGAGAAGG 406
BSNT_03152___ 407 GAATTGACCTGTCTCAAGTTCCAACTGGAGATCCGCTTGGAAGAGTGCGC 456
|..|.|||.|.|||.||.|||||||.|.|||||||||.||.||.||.||.
BPUM_1861___o 407 GGCTAGACTTATCTGAAATTCCAACCGTAGATCCGCTGGGCAGGGTACGA 456
BSNT_03152___ 457 AAGCAGGATGTCG---------AAGCGTACGAAAAACC------GGCATC 491
|||||||||||.| ||..|.|.|||..||| .|||.|
BPUM_1861___o 457 AAGCAGGATGTTGCTTCTTATCAAAAGAATGAAGCACCTGCAAGTGCACC 506
BSNT_03152___ 492 AAAACCGGCTCCTCAGCAAAAGCA---GCAGCCTCAGGCTCAAAAAGCAC 538
||||.|.||.| |||||||| ||.|| ||..|||||.|.||
BPUM_1861___o 507 AAAAGCCGCGC-----CAAAAGCAAATGCTGC----GGTGCAAAATGAAC 547
BSNT_03152___ 539 -AGCAAAGCTTTGAAAAACCTGTTGAA-GTGCAAAAAATGTCACGCCGCA 586
|||| |.|||.||.|||||| ||| |.|.||||||.|||||.|
BPUM_1861___o 548 AAGCA-------GGAAAGCCAGTTGAACGTG-AGAGAATGTCGCGCCGGA 589
BSNT_03152___ 587 GACAAACGATTGCAAAACGCCTTGTAGAGGTACAGCAAACATCAGCGATG 636
|||||||||||||.|||||..|.||.|||||.||||||||..|.||.|||
BPUM_1861___o 590 GACAAACGATTGCCAAACGTTTAGTTGAGGTTCAGCAAACGGCTGCAATG 639
BSNT_03152___ 637 CTGACCACATTTAATGAAGTGGACATGACGGCTGTCATGAATCTCAGAAA 686
|||||.||||||||||||||.||.|||||.|||||.|||.|..|.|||||
BPUM_1861___o 640 CTGACGACATTTAATGAAGTAGATATGACAGCTGTGATGGACTTAAGAAA 689
BSNT_03152___ 687 ACGCCGCAAAGATCAATTCTTTGAGCAAAATGAAGTGAAGCTCGGCTTTA 736
.|||||.||||||...|||.||||.||||||||.||.|||||.||.||.|
BPUM_1861___o 690 GCGCCGTAAAGATGCCTTCCTTGAACAAAATGATGTAAAGCTTGGTTTCA 739
BSNT_03152___ 737 TGTCTTTCTTCACGAAAGCGGTCGTGGCTGCATTGAAAAAATATCCGCTG 786
||||.||||||||.|||||.||.||.||.|||.||||.||||||||||||
BPUM_1861___o 740 TGTCCTTCTTCACAAAAGCAGTTGTAGCAGCACTGAAGAAATATCCGCTG 789
BSNT_03152___ 787 TTGAATGCAGAAATTCAAGGCGATGAG-TTGATCGTTAAAAAATTCTACG 835
.|.||.||||||||||||||.|||||| ||| ||.|.||.||||||||.|
BPUM_1861___o 790 CTTAACGCAGAAATTCAAGGTGATGAGCTTG-TCTTGAAGAAATTCTATG 838
BSNT_03152___ 836 ATATCGGAATCGCTGTTGCTGCTGATGAAGGCCTTGTCGTTCCGGTTGTG 885
|.|||||.|||||||||||||||.|.|||||.||||||||.||||||||.
BPUM_1861___o 839 ACATCGGCATCGCTGTTGCTGCTAACGAAGGACTTGTCGTACCGGTTGTC 888
BSNT_03152___ 886 CGGGATGCGGATCGCCTGACATTTGCAGGAATCGAAAAAGAGATCGGCGA 935
||.|||||.||..|..||.|.||||||||.||.|||||.||.||.||..|
BPUM_1861___o 889 CGTGATGCAGACAGATTGTCGTTTGCAGGGATTGAAAAGGAAATTGGTCA 938
BSNT_03152___ 936 GCTTGCGAAAAAAGCAAGAAACAATAAATTAACCCTTAGCGAGCTTCAGG 985
.|||||||||||||||.||.|.||.|||||..|.||.|..|||||.||.|
BPUM_1861___o 939 TCTTGCGAAAAAAGCACGAGATAACAAATTGTCTCTAAATGAGCTACAAG 988
BSNT_03152___ 986 GAGGCTCTTTCACGATTACAAACGGAGGGACTTTCGGTTCATTGATGTCA 1035
|.||.||.||||||||.||||||||.||.||.|||||||||.||.|.|||
BPUM_1861___o 989 GTGGATCATTCACGATCACAAACGGCGGAACATTCGGTTCACTGCTTTCA 1038
BSNT_03152___ 1036 ACTCCAATTTTAAACAGCCCGCAAGTCGGTATACTGGGCATGCATAAGAT 1085
||.|||||||||||||||||.|||||.||.||..|.||.|||||.||.||
BPUM_1861___o 1039 ACACCAATTTTAAACAGCCCTCAAGTTGGAATTTTAGGGATGCACAAAAT 1088
BSNT_03152___ 1086 TCAGCTGCGCCCTGTAGCCATTGATGAAGAGCGTTTCGAAAACCGTCCGA 1135
||||||.||.|||||.||.|||||||||||.|||||.||.||||||||||
BPUM_1861___o 1089 TCAGCTTCGACCTGTGGCAATTGATGAAGAACGTTTTGAGAACCGTCCGA 1138
BSNT_03152___ 1136 TGATGTATATCGCTTTATCTTATGATCACCGAATTGTAGACGGTAAAGAA 1185
||||||||.|.|||.|.|||||.||.|||||.|||||.||.||.||||||
BPUM_1861___o 1139 TGATGTATTTAGCTCTTTCTTACGACCACCGGATTGTCGATGGAAAAGAA 1188
BSNT_03152___ 1186 GCGGTTGGTTTCCTCGTGACAATCAAAAATTTACTGGAAGATCCTGAACA 1235
||.|||||.|||||.||.||.||.|||||.||.||.||||||||.||.||
BPUM_1861___o 1189 GCAGTTGGATTCCTTGTCACGATTAAAAACTTGCTTGAAGATCCAGAGCA 1238
BSNT_03152___ 1236 GCTTTTATTAGAAGGATAA 1254
|||.||..|.|||||||||
BPUM_1861___o 1239 GCTATTGCTTGAAGGATAA 1257
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