Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03149 and BPUM_1859

See Amino acid alignment / Visit BSNT_03149 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:38
# Commandline: needle
#    -asequence dna-align/BSNT_03149___sodF.1.24716.seq
#    -bsequence dna-align/BPUM_1859___sodF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03149___sodF-BPUM_1859___sodF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03149___sodF-BPUM_1859___sodF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03149___sodF
# 2: BPUM_1859___sodF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 929
# Identity:     550/929 (59.2%)
# Similarity:   550/929 (59.2%)
# Gaps:         199/929 (21.4%)
# Score: 1563.5
# 
#
#=======================================

BSNT_03149___      1 ATGAAACGTGAATCTTATCAAACGGAGATGTTCAAT-TGGTGTGAAGCCC     49
                            .|||||       ||.|.||      ||| |.||.||.||  |
BPUM_1859___s      1 -------ATGAAT-------AAGGAAG------AATATCGTATGCAG--C     28

BSNT_03149___     50 TGAAAGATCAGATTCAAAAGCGAGGACAGCTTGACCAGTTTGAAGAT-CA     98
                     |.||||||..|.||             ||||   |||  ||.||||| ||
BPUM_1859___s     29 TTAAAGATTGGCTT-------------AGCT---CCA--TTCAAGATGCA     60

BSNT_03149___     99 AATCGACAAGATGA-------------------------TTGAGGCTC--    121
                     |.|   ||||||||                         ||...|.||  
BPUM_1859___s     61 ATT---CAAGATGACAACATCCGTCAAAAAGCAGAACATTTATCGTTCAT    107

BSNT_03149___    122 --TGGAAGATGACCAAACAACAGAAGAAGATTGGTATAAACAGGCCGCTG    169
                       ||.|.|||||.||..|.|..||||||||.|||||.|.|..|||     
BPUM_1859___s    108 CATGAATGATGAGCATTCCAGTGAAGAAGAGTGGTACACATTGGC-----    152

BSNT_03149___    170 CCCTTTACCGGGA---TATTACAGA--ATCAGATGAT---ACAAG-TGAA    210
                               .||   ||||.||||  ||   ||.||   ||||| ||.|
BPUM_1859___s    153 ----------TGAAAGTATTGCAGAGGAT---ATAATTCCACAAGATGCA    189

BSNT_03149___    211 AGACGCGCATATGTCCCTATAGGGAAACACGT--GCTGCCA--AA-----    251
                     |..||   |.||||           |.|| ||  ||.|.||  ||     
BPUM_1859___s    190 ATTCG---AGATGT-----------AGCA-GTTGGCGGTCATCAATTACC    224

BSNT_03149___    252 ---GCTTCCTTACAAATACTCCGCCTTAGAACCTTATATTTCACGCGATA    298
                        .||.||||||...||....||..|||||||.|.|||||||...||.|
BPUM_1859___s    225 CCCTCTCCCTTACCGGTATGATGCACTAGAACCGTTTATTTCAAAAGAAA    274

BSNT_03149___    299 TTATGGTCCTT-CATCATACA-AAACATCATCAAAGCTATGTCGATGGCC    346
                     |||| ||..|| ||||| .|| ||.|||||.|||...|||||.|||||.|
BPUM_1859___s    275 TTAT-GTATTTGCATCA-CCAGAAGCATCACCAATCATATGTTGATGGTC    322

BSNT_03149___    347 TGAACAAAGCAGAATCAGAGCTT------AAAAAAGCGAGAGCAACAAAG    390
                     |||||.|||      |.||||||      ||||.|||||||..|||.||.
BPUM_1859___s    323 TGAACCAAG------CTGAGCTTGCCTTAAAAAGAGCGAGAAGAACCAAT    366

BSNT_03149___    391 AATTATGACTTAATCACTCATTGGGAAAGAGAGCTTGCGTTCCATGGAGC    440
                     .|||.|.|..|.||||..|||||||||.|.||||||||.|||.||||.||
BPUM_1859___s    367 GATTTTAAGATGATCAAGCATTGGGAACGGGAGCTTGCCTTCAATGGTGC    416

BSNT_03149___    441 AGGCCATTATTTGCACAGTATTTTTTGGTTTTCTATGCATCC-------A    483
                     .||.||.|||||.||..|.||||||||||||||.|||..|||       |
BPUM_1859___s    417 GGGACACTATTTACATTGCATTTTTTGGTTTTCCATGAGTCCTTCAGGGA    466

BSNT_03149___    484 AACGGAAAACGGCGTCCTACAGGGGCATTGTTCCAAAT---------GAT    524
                     |.||.||       .||.||.|||         |||||         |||
BPUM_1859___s    467 AGCGAAA-------GCCCACTGGG---------CAAATGCTTCGCCAGAT    500

BSNT_03149___    525 AGACCTTTCATTTGGAAGCTATTCCGCTTTTAAAGAACATTTTACCCAGG    574
                     .||.|..||.||||.|||||||...||.||.||||..||.|||.|....|
BPUM_1859___s    501 TGAACAATCGTTTGAAAGCTATGATGCATTCAAAGCCCAATTTTCTGCTG    550

BSNT_03149___    575 CCGCTAAAAAAGTGGAAGGCGTCGGCTGGGCCATTCTGGTCTGGGCACCT    624
                     |.||||||.||||.|||||.|||||||||||.|||||.||.|||||.||.
BPUM_1859___s    551 CAGCTAAACAAGTAGAAGGTGTCGGCTGGGCGATTCTCGTTTGGGCGCCC    600

BSNT_03149___    625 CGA--TCAGGACGGCTGGAGATTTTAACGGCAGAAAAACACCA-------    665
                     .||  ||||  ||..|.|||||||||...||||||...|||||       
BPUM_1859___s    601 AGATCTCAG--CGATTAGAGATTTTACAAGCAGAACGCCACCAATTTTTA    648

BSNT_03149___    666 --GCAATGGGATGTGATCCCCCTTTTACCGCTTGACGTATGGGAGCATGC    713
                       .|||||||||||||||||.|||.|..|.||||||||||||||.||.||
BPUM_1859___s    649 TCACAATGGGATGTGATCCCTCTTCTCGCTCTTGACGTATGGGAACACGC    698

BSNT_03149___    714 CTACTATTTGCAATACAAAAATGA-----CCGGGCCAGCTATGTCGATCA    758
                     |||||||.|||||||....|||||     |  |||   ||||||.||||.
BPUM_1859___s    699 CTACTATCTGCAATATCTGAATGAAAAAGC--GGC---CTATGTAGATCG    743

BSNT_03149___    759 CTGGTGGAATGTCGTGGATTGGCGCGAGGCTGAAAAACGTTTTGAGCAGG    808
                     .||||||||||||||.||.||||..|||.|.|||..|||..||.||||.|
BPUM_1859___s    744 TTGGTGGAATGTCGTTGACTGGCATGAGCCAGAAGCACGGCTTAAGCAAG    793

BSNT_03149___    809 CAAAAGAAGTCGTTTGGAAGCTCTATTAA    837
                     |..|..||||....||||..|..|.||||
BPUM_1859___s    794 CTCAGCAAGTGAAATGGACCCCTTTTTAA    822


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