Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03149 and BPUM_1859
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:38
# Commandline: needle
# -asequence dna-align/BSNT_03149___sodF.1.24716.seq
# -bsequence dna-align/BPUM_1859___sodF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03149___sodF-BPUM_1859___sodF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03149___sodF-BPUM_1859___sodF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03149___sodF
# 2: BPUM_1859___sodF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 929
# Identity: 550/929 (59.2%)
# Similarity: 550/929 (59.2%)
# Gaps: 199/929 (21.4%)
# Score: 1563.5
#
#
#=======================================
BSNT_03149___ 1 ATGAAACGTGAATCTTATCAAACGGAGATGTTCAAT-TGGTGTGAAGCCC 49
.||||| ||.|.|| ||| |.||.||.|| |
BPUM_1859___s 1 -------ATGAAT-------AAGGAAG------AATATCGTATGCAG--C 28
BSNT_03149___ 50 TGAAAGATCAGATTCAAAAGCGAGGACAGCTTGACCAGTTTGAAGAT-CA 98
|.||||||..|.|| |||| ||| ||.||||| ||
BPUM_1859___s 29 TTAAAGATTGGCTT-------------AGCT---CCA--TTCAAGATGCA 60
BSNT_03149___ 99 AATCGACAAGATGA-------------------------TTGAGGCTC-- 121
|.| |||||||| ||...|.||
BPUM_1859___s 61 ATT---CAAGATGACAACATCCGTCAAAAAGCAGAACATTTATCGTTCAT 107
BSNT_03149___ 122 --TGGAAGATGACCAAACAACAGAAGAAGATTGGTATAAACAGGCCGCTG 169
||.|.|||||.||..|.|..||||||||.|||||.|.|..|||
BPUM_1859___s 108 CATGAATGATGAGCATTCCAGTGAAGAAGAGTGGTACACATTGGC----- 152
BSNT_03149___ 170 CCCTTTACCGGGA---TATTACAGA--ATCAGATGAT---ACAAG-TGAA 210
.|| ||||.|||| || ||.|| ||||| ||.|
BPUM_1859___s 153 ----------TGAAAGTATTGCAGAGGAT---ATAATTCCACAAGATGCA 189
BSNT_03149___ 211 AGACGCGCATATGTCCCTATAGGGAAACACGT--GCTGCCA--AA----- 251
|..|| |.|||| |.|| || ||.|.|| ||
BPUM_1859___s 190 ATTCG---AGATGT-----------AGCA-GTTGGCGGTCATCAATTACC 224
BSNT_03149___ 252 ---GCTTCCTTACAAATACTCCGCCTTAGAACCTTATATTTCACGCGATA 298
.||.||||||...||....||..|||||||.|.|||||||...||.|
BPUM_1859___s 225 CCCTCTCCCTTACCGGTATGATGCACTAGAACCGTTTATTTCAAAAGAAA 274
BSNT_03149___ 299 TTATGGTCCTT-CATCATACA-AAACATCATCAAAGCTATGTCGATGGCC 346
|||| ||..|| ||||| .|| ||.|||||.|||...|||||.|||||.|
BPUM_1859___s 275 TTAT-GTATTTGCATCA-CCAGAAGCATCACCAATCATATGTTGATGGTC 322
BSNT_03149___ 347 TGAACAAAGCAGAATCAGAGCTT------AAAAAAGCGAGAGCAACAAAG 390
|||||.||| |.|||||| ||||.|||||||..|||.||.
BPUM_1859___s 323 TGAACCAAG------CTGAGCTTGCCTTAAAAAGAGCGAGAAGAACCAAT 366
BSNT_03149___ 391 AATTATGACTTAATCACTCATTGGGAAAGAGAGCTTGCGTTCCATGGAGC 440
.|||.|.|..|.||||..|||||||||.|.||||||||.|||.||||.||
BPUM_1859___s 367 GATTTTAAGATGATCAAGCATTGGGAACGGGAGCTTGCCTTCAATGGTGC 416
BSNT_03149___ 441 AGGCCATTATTTGCACAGTATTTTTTGGTTTTCTATGCATCC-------A 483
.||.||.|||||.||..|.||||||||||||||.|||..||| |
BPUM_1859___s 417 GGGACACTATTTACATTGCATTTTTTGGTTTTCCATGAGTCCTTCAGGGA 466
BSNT_03149___ 484 AACGGAAAACGGCGTCCTACAGGGGCATTGTTCCAAAT---------GAT 524
|.||.|| .||.||.||| ||||| |||
BPUM_1859___s 467 AGCGAAA-------GCCCACTGGG---------CAAATGCTTCGCCAGAT 500
BSNT_03149___ 525 AGACCTTTCATTTGGAAGCTATTCCGCTTTTAAAGAACATTTTACCCAGG 574
.||.|..||.||||.|||||||...||.||.||||..||.|||.|....|
BPUM_1859___s 501 TGAACAATCGTTTGAAAGCTATGATGCATTCAAAGCCCAATTTTCTGCTG 550
BSNT_03149___ 575 CCGCTAAAAAAGTGGAAGGCGTCGGCTGGGCCATTCTGGTCTGGGCACCT 624
|.||||||.||||.|||||.|||||||||||.|||||.||.|||||.||.
BPUM_1859___s 551 CAGCTAAACAAGTAGAAGGTGTCGGCTGGGCGATTCTCGTTTGGGCGCCC 600
BSNT_03149___ 625 CGA--TCAGGACGGCTGGAGATTTTAACGGCAGAAAAACACCA------- 665
.|| |||| ||..|.|||||||||...||||||...|||||
BPUM_1859___s 601 AGATCTCAG--CGATTAGAGATTTTACAAGCAGAACGCCACCAATTTTTA 648
BSNT_03149___ 666 --GCAATGGGATGTGATCCCCCTTTTACCGCTTGACGTATGGGAGCATGC 713
.|||||||||||||||||.|||.|..|.||||||||||||||.||.||
BPUM_1859___s 649 TCACAATGGGATGTGATCCCTCTTCTCGCTCTTGACGTATGGGAACACGC 698
BSNT_03149___ 714 CTACTATTTGCAATACAAAAATGA-----CCGGGCCAGCTATGTCGATCA 758
|||||||.|||||||....||||| | ||| ||||||.||||.
BPUM_1859___s 699 CTACTATCTGCAATATCTGAATGAAAAAGC--GGC---CTATGTAGATCG 743
BSNT_03149___ 759 CTGGTGGAATGTCGTGGATTGGCGCGAGGCTGAAAAACGTTTTGAGCAGG 808
.||||||||||||||.||.||||..|||.|.|||..|||..||.||||.|
BPUM_1859___s 744 TTGGTGGAATGTCGTTGACTGGCATGAGCCAGAAGCACGGCTTAAGCAAG 793
BSNT_03149___ 809 CAAAAGAAGTCGTTTGGAAGCTCTATTAA 837
|..|..||||....||||..|..|.||||
BPUM_1859___s 794 CTCAGCAAGTGAAATGGACCCCTTTTTAA 822
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