Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03148 and BPUM_1858
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:38
# Commandline: needle
# -asequence dna-align/BSNT_03148___sqhC.1.24716.seq
# -bsequence dna-align/BPUM_1858___sqhC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03148___sqhC-BPUM_1858___sqhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03148___sqhC-BPUM_1858___sqhC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03148___sqhC
# 2: BPUM_1858___sqhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2135
# Identity: 1239/2135 (58.0%)
# Similarity: 1239/2135 (58.0%)
# Gaps: 496/2135 (23.2%)
# Score: 3266.5
#
#
#=======================================
BSNT_03148___ 1 ATGGGCACACTTCAGGAGAAAGTGAGGC--GTTTTCA-----AAAGAAAA 43
|.|| |.||||| ||||.|||
BPUM_1858___s 1 ------------------------ATGCAAGATTTCAAAACGAAAGTAAA 26
BSNT_03148___ 44 C-CAT-TACCGAGTTAAGAG-ACAGGCAAAATGCTGATGGTTCATGGACA 90
| .|| ||..|| |.||..| |||.|| ||||||.| |||.||||
BPUM_1858___s 27 CGTATATATGGA-TGAACTGCACATGC-AAATGCAG------CATAGACA 68
BSNT_03148___ 91 ----------------------TTTTGCTTTGAAGGACCAATCATGACAA 118
||.|||||||||||..|.||.|||||||
BPUM_1858___s 69 ACGAGAAGATGGCGCTTTTGTCTTCTGCTTTGAAGGGTCCATGATGACAA 118
BSNT_03148___ 119 ATTCCTTTTTTATTTTGCTCCTTACCTCACTAGATGAAGGCGAAAATGAA 168
||.|.|||||.|||.|| ||| |.|...|.||..|||||.|..||.
BPUM_1858___s 119 ATGCTTTTTTAATTATG----TTA--TTAAAGGCTGTCGGCGATACGGAT 162
BSNT_03148___ 169 AAAGAACTGATATCATCCCTT-GCAGCCGGCATTCATGCAAAACAGCAGC 217
.|.|...||.| |||||..|| ||||..|..|||| ||.||| |||
BPUM_1858___s 163 CAGGCTTTGGT-TCATCAATTGGCAGAAGCAATTC--GCGAAA----AGC 205
BSNT_03148___ 218 CA------GACGGCACATT-------TATCAACT-ATCCCGACGAAACGT 253
.| ||.||..|.|| ||||| | ||| |.|.
BPUM_1858___s 206 AAAATGAGGATGGTTCTTTCTCTTTGTATCA--TGATC--------AGGC 245
BSNT_03148___ 254 GCGGAAATCTAACGGCTACCGTCCAAGGATA-TGTCGGGATGCTGGCTTC 302
| |||.||.||||.||.||.||.|||||.|| || |||.|||||.|..||
BPUM_1858___s 246 G-GGACATGTAACCGCGACTGTGCAAGGCTACTG-CGGAATGCTTGTGTC 293
BSNT_03148___ 303 AGGATGTTTTCA--CAGATCTGAGCCGCACATGAAGAAAGCTGAACAATT 350
|||..|.|.||| .||| |||||||||.|||.|.|||||.|.||.||.
BPUM_1858___s 294 AGGCAGGTATCAACAAGA--TGAGCCGCATATGGAAAAAGCAGCACGATA 341
BSNT_03148___ 351 TATCATCTCATATGGCGGTTTGAGACATGTTCATTTTATGACAAAATGGA 400
|||....|||.|.||.||.||.|.|.|.|||||||||||||||||.||||
BPUM_1858___s 342 TATACGATCAAAAGGTGGATTAAAAGACGTTCATTTTATGACAAAGTGGA 391
BSNT_03148___ 401 TGCTTGCCGCGAACGGGCTTTACCCTTGGCC-TGCTTTGTA--------T 441
|||||||||..||.||..|..|||||||||| |.| ||.|| |
BPUM_1858___s 392 TGCTTGCCGTCAATGGAATGCACCCTTGGCCATAC-TTCTATGCCCCACT 440
BSNT_03148___ 442 TTACCATTATCACTCATGGCGCTCCCCCCAACA---TTGCCGATTCATTT 488
|| ||||.|.|||||| |||.||| ||.|||.||||.||
BPUM_1858___s 441 TT--CATTTTTACTCAT---------CCCTACATACTTCCCGCTTCACTT 479
BSNT_03148___ 489 CTATCAGTTCAGCTCATATGCCCGTATTCATTTTGCTCCTATGGCTGTAA 538
||||||..|.||..|.|||||..|.|||||||||| |||
BPUM_1858___s 480 CTATCATCTTAGTGCCTATGCAAGAATTCATTTTG-TCC----------- 517
BSNT_03148___ 539 CACTCAATCAGCGAT--TTGTCCTTATTAACCGCAATATTTC-------- 578
|||| ||| |||..||||..||.||..|||.|||
BPUM_1858___s 518 ----CAAT----GATGATTGCACTTAACAAACGATATACTTCCCATGAGC 559
BSNT_03148___ 579 --------ATCTCTTCGCCATCTCGATCCGCACATGACAAAAAATCCTTT 620
|.||..|| .|||||.|||.||.|||||.|.||||||||||
BPUM_1858___s 560 AGTTTCCAAGCTTATC-ACATCTTGATGCGAACATGTCTAAAAATCCTT- 607
BSNT_03148___ 621 CACTTGGCTTCGGTCTGATGCTTTCGATGAAAGAGA----------TCTC 660
|||.|| ||| |.||| |.|||||| .|||
BPUM_1858___s 608 ---TTGACT--GGT-TTATG--------GCAAGAGAAGAACGTTCCACTC 643
BSNT_03148___ 661 ACGTCTATTTT---GTCACATTGGAAACGCGTTTTTCATGCACCATTTGC 707
||..|| ||.| || |||| |||.|..| ||.||.|| |
BPUM_1858___s 644 ACCACT-TTCTAGCGT-ACAT-------GCGGTCGT-ATACAGCA----C 679
BSNT_03148___ 708 TTTTCAGCAGCT-----------GGGCCTA-CAGACAGCTAAAACG-TAT 744
|...||||||.| ||| || .||.|||| .||.|| |||
BPUM_1858___s 680 TCGACAGCAGGTTCGACTTTTTCGGG--TATGAGGCAGC-GAAGCGATAT 726
BSNT_03148___ 745 ATGCTGGACCGGATTGAAAAAGATGGAACATTATACAGCTATGCGAGCGC 794
|||.|.|||||..|||||||||||||.||..|.|||||||||...||.||
BPUM_1858___s 727 ATGTTTGACCGTCTTGAAAAAGATGGCACGCTGTACAGCTATTTAAGTGC 776
BSNT_03148___ 795 AACCATATATATGGTTTACAGCCTTCTGTCACTTGGTGTGTC------AC 838
.|..||.|.||||||.|| |.||.||| ||.||| ||
BPUM_1858___s 777 CAGTATTTTTATGGTCTA-----TGCTCTCA-----TGAGTCTTGGATAC 816
BSNT_03148___ 839 GCT-------AT--TCTCCTATTATCAGGAGAGCGATTACCGGCATTAAA 879
.|| || ||||.|.||| |.|||..|.|..||.||.|||
BPUM_1858___s 817 TCTCCGGGACATCATCTCATTTTA-----AAAGCAGTCAAAGGGATGAAA 861
BSNT_03148___ 880 -------TCACT--------GGTGACTAAATGCAACGGGATTCCTTATCT 914
||||| ||.||..|||| ||| ||
BPUM_1858___s 862 CAGCTAGTCACTGACTGTGGGGGGAAGAAAT---ACG-----------CT 897
BSNT_03148___ 915 GGAAAACTCTACTTCAACTGTTTGGGATACAGCTCTAATCAGCTATGCCC 964
||.||.|||||.||.|||||||||||||||||.||..||||.|||| |
BPUM_1858___s 898 -GAGAATTCTACATCTACTGTTTGGGATACAGCGCTTGTCAGTTATG--C 944
BSNT_03148___ 965 TTCAAAAAAATGGTGTGACCGA--------AAC---GGATGGCTCTGTTA 1003
||| |.|.||| ||| .||||...|.||||
BPUM_1858___s 945 TTC------------TCAGCGAGCGGGCAGAACACAAGATGATCCAGTTA 982
BSNT_03148___ 1004 --CAAAAGCAGCCGACTTT-------TTGCTAGAA-CGCCAGCATACCAA 1043
.|||| |.|||| ||.|| ||| ||.|||||.|..||
BPUM_1858___s 983 TTAAAAA------GTCTTTTACGTACTTACT-GAACCGGCAGCAAATGAA 1025
BSNT_03148___ 1044 AACAGCAGATTGGTCTGTCAAAAATCCA-------AATTCAGTTCCTGGC 1086
.|.||||||||||.| |||||| .||.|.|.|||.||.
BPUM_1858___s 1026 GAAAGCAGATTGGGC-------AATCCATAACCGGCATGCGGCTCCGGGA 1068
BSNT_03148___ 1087 GGCTGGGGGTTTTCAAACATTAATACAAATAACCCTGACTGTGACGACAC 1136
||||..||.||||||.|..|.||.|||||||||||.||.|||||.||.||
BPUM_1858___s 1069 GGCTTTGGTTTTTCAGATTTGAACACAAATAACCCAGATTGTGATGATAC 1118
BSNT_03148___ 1137 TGC-AGCCGTTTTAAAGGCGATTCCCCGCAATCATTCTCCTG--CAGCAT 1183
|| |...||.|||||.||.|||||.|..|.|.||.|||||| ||| |
BPUM_1858___s 1119 -GCAAATTGTGTTAAAAGCCATTCCTCAAACTTATGCTCCTGTTCAG--T 1165
BSNT_03148___ 1184 GGGAGCGGGGGGTATCTTGGCTTTTATCGATGCAAAACAATGACGGCGGA 1233
||.|.||.||..|...|||||||.|.||.|||||||||...||.||.||.
BPUM_1858___s 1166 GGAAACGAGGATTTGATTGGCTTCTTTCCATGCAAAACCGGGATGGTGGC 1215
BSNT_03148___ 1234 TTTTCTGCTTTTGAAAAAAACGTGAACCATCCAC----TGATCCGCCTTC 1279
|||||.|||||||||||||| |.|| .|| ||| ||.|.||.|.||
BPUM_1858___s 1216 TTTTCAGCTTTTGAAAAAAA--TCAA-GAT-CACTTCTTGCTTCGTCATC 1261
BSNT_03148___ 1280 TGCCGCTTGAATCCGCCGAGGACGCTGCAGTTGACCCTTCAACCGCCGAC 1329
|.|||||.|||||.||.|||||.||.||..||||.|||||.||..|.||.
BPUM_1858___s 1262 TCCCGCTCGAATCTGCTGAGGATGCGGCCATTGATCCTTCTACTCCTGAT 1311
BSNT_03148___ 1330 CTCACCGGACGAGTACTGCACTTTTTAGGCGAGAAAGTTGGCTTC---AC 1376
.|.||.||.||.||.||.|||.|| .|.||||| |.
BPUM_1858___s 1312 ATTACAGGTCGTGTGCTCCACCTT-------------ATCGCTTCTGAAG 1348
BSNT_03148___ 1377 AGAAAAACA----ACAACATATTCAACGCGCA-------------GTGAA 1409
||||..||| ||.||..||.|||.| ||| |||||
BPUM_1858___s 1349 AGAACGACAAGTCACCACTCATGCAAAG-GCAAAAAGATCATTGTGTGAA 1397
BSNT_03148___ 1410 GTGGCTATTCGAACATCAGGAACAAAATGGGTCTTGGTACGGCAGATGGG 1459
.|||||..|.||.|||||.||..|..|.||.||.||||||||||||||||
BPUM_1858___s 1398 ATGGCTGCTTGATCATCAAGAGAAGGACGGATCATGGTACGGCAGATGGG 1447
BSNT_03148___ 1460 GTGTTTGCTACATTTACGGCACTTGGGCTGCTCTTACTGG---------T 1500
|.||||||||.|||||.||.|||||||||||..|.||||| |
BPUM_1858___s 1448 GCGTTTGCTATATTTATGGTACTTGGGCTGCGTTAACTGGACTAAAGGCT 1497
BSNT_03148___ 1501 A-TGCATGCATGCGGGGTTGACC-GAAAGCATCCCGGTATACAAAAGGCT 1548
| || ||||.| || .|..||||||.|.|.|.|||||.||
BPUM_1858___s 1498 AGTG---GCATCC--------CCTCATCGCATCCTGCTGTTCAAAAAGC- 1535
BSNT_03148___ 1549 CTG-CGTTGGCTCAAATCCATACAAAATGATGACGGAAGCTGGGGAGAAT 1597
.|| ||.|...|.|||.||||.|||...||.||.||.||||..|||||||
BPUM_1858___s 1536 ATGTCGATTTTTAAAAACCATTCAATTAGAAGATGGCAGCTTCGGAGAAT 1585
BSNT_03148___ 1598 CCTGCAAAAGCGCCGAAATCAAAACATATGTACCGCTT-CATAGAGGAAC 1646
|.||.|||||..|.||..|.||||.||||||.|||||| ||| ..|||||
BPUM_1858___s 1586 CGTGTAAAAGTTCAGAGGTTAAAAGATATGTCCCGCTTCCAT-TTGGAAC 1634
BSNT_03148___ 1647 CATTGTACAAACGGCCTGGGCT--TTAGACGCTT----------TGCTCA 1684
..|.||.||||||||.|||||| |.||.|.||| |||...
BPUM_1858___s 1635 AGTGGTTCAAACGGCTTGGGCTGCTGAGGCACTTTTACAATACGTGCAGC 1684
BSNT_03148___ 1685 CATATGA-AAATTCCGAACATCCGTCTGTTGTGAAAGGCATGCAATACCT 1733
||.|||| |||| ||| ||.|.||||.||| ||
BPUM_1858___s 1685 CAGATGACAAAT--CGA-----------TTTTAAAAGCCAT-------CT 1714
BSNT_03148___ 1734 TACCG-----------ACAGCAG--TTCGCATAGCGCCGATAGCCTCGC- 1769
|| |||.||| ||||..| |.|||.|.||
BPUM_1858___s 1715 ---CGTTTTTGATTCAACATCAGCATTCGAGT-------AAAGCTTTGCA 1754
BSNT_03148___ 1770 GTATCCAGCAGGGATCGGATTGCCGAAGCAATTTTATATTCGCTATCACA 1819
.|||||||.|||.||.||..|.||.|||||||||||.|||..||||||.|
BPUM_1858___s 1755 CTATCCAGTAGGCATTGGTCTTCCAAAGCAATTTTACATTACCTATCATA 1804
BSNT_03148___ 1820 GTTATCCATATGTATTCTCTTTGCTGGC-TGT--CGGGAAATATTTAGAT 1866
|.|||||||.|||.||..|..||.|||| ||| | |.||.||||||
BPUM_1858___s 1805 GCTATCCATTTGTTTTTCCAATGATGGCTTGTTCC---ACATTTTTAGA- 1850
BSNT_03148___ 1867 TCTATTGAAA--AGGAGACAGCAAATGAAACGTGA 1899
.|||| |||.|..| ||||||| |.|
BPUM_1858___s 1851 -----AGAAATGAGGCGTAA--AAATGAA---TAA 1875
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