Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03594 and BPUM_1848
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:08
# Commandline: needle
# -asequence dna-align/BSNT_03594___mmgD.1.24716.seq
# -bsequence dna-align/BPUM_1848___mmgD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03594___mmgD-BPUM_1848___mmgD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03594___mmgD-BPUM_1848___mmgD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03594___mmgD
# 2: BPUM_1848___mmgD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1272
# Identity: 728/1272 (57.2%)
# Similarity: 728/1272 (57.2%)
# Gaps: 282/1272 (22.2%)
# Score: 1776.5
#
#
#=======================================
BSNT_03594___ 1 ATGGAGGAGAAACAGCATTATTCTCCAGGG-TTG--GACGGTGTGATTGC 47
|||...||..|||.|||.|||...||.||| ||| ||| ||||.
BPUM_1848___m 1 ATGACTGAACAACTGCAGTATAAACCGGGGCTTGAAGAC------ATTGT 44
BSNT_03594___ 48 GGCA---GAAAC-TCATATTTCTTATCTT-GACACCCAGTCCAGC----- 87
|||| ||||| || |||.||.|| ||| || .||.||||
BPUM_1848___m 45 GGCAAGCGAAACGTC-TATCTCATA-CTTAGA-----TGTGCAGCAAGAA 87
BSNT_03594___ 88 CAGATTTTGATACGGGGCTATGATTTAATAGAACTTTCTGAAACAAAAAG 137
.|||||.|.||.||.||.|||||..|.||.||..|..|..|||.|||.|.
BPUM_1848___m 88 GAGATTGTAATTCGCGGGTATGACCTCATCGAGTTGGCACAAAAAAAGAC 137
BSNT_03594___ 138 CTATCTGG----AGCTTGTCCATTTATTGCTGGAGGGCAGGCTGCCAGAA 183
||||.|.| |||.|.||...|||||..|||| ||..|.|||||
BPUM_1848___m 138 CTATTTAGAAACAGCCTATCTGCTTATTTATGGA----AGATTACCAGA- 182
BSNT_03594___ 184 GAAAGTGAAATGGAAACGCTGGAACGTAAAAT------AAACAGTGCCTC 227
||..|||||| .|.|.|.||.| |.|||.|.||||
BPUM_1848___m 183 -----TGCCATGGAA------TATCATCAATTTCAGCAAGACATTTCCTC 221
BSNT_03594___ 228 A-------------AGCCTGCC-TGCTGATCATCTCCGTCTGCTTGAGC- 262
| |.||..|| |.|..|.||| ||.|.|
BPUM_1848___m 222 ACAAACCAACTTACATCCAACCATTCAAACCAT----------TTTAACA 261
BSNT_03594___ 263 -TGCTCCCTAAGGACACTCATCCAATGGATAGTC-TGCGTACCGGCCTGT 310
..||.||.||...|||.|||||.|||||| |.| ||.|.||..||.|.|
BPUM_1848___m 262 AAACTGCCAAAAACCACCCATCCGATGGAT-GCCATGAGAACGTGCATAT 310
BSNT_03594___ 311 CGGCACTTGCTGG---CTATGATCGGCAAATT----GAT-GATCGGTCTC 352
|.||.|||..||| |.||||| || ||| ||| ||||.|...|
BPUM_1848___m 311 CTGCTCTTAGTGGATACGATGAT--GC--ATTACAAGATCGATCAGAAGC 356
BSNT_03594___ 353 CTTCCGCAAACAAAGAACGCGC----CTATCAGCTTCTTGGGAAAATGCC 398
.| ||.|.||||| |||.|| |.|| |.||.||..|..||||
BPUM_1848___m 357 GT---GCCAGCAAAG-ACGTGCTGTTCGAT----TACTCGGCCAGCTGCC 398
BSNT_03594___ 399 TGCCCTCACTGCTGCCAGCTACAGGATCATTAAT----AAGAAAGA-ACC 443
.||..|....||||..|||| ||||| || |..||||| .||
BPUM_1848___m 399 GGCGATTGTCGCTGGAAGCT-----ATCAT--ATTCTCACAAAAGACGCC 441
BSNT_03594___ 444 G--ATTCTTCCGCTTCAAACCCTATCCTACAGTGCGAA---TTTTCTCTA 488
| |||..|||...|||.|||..||||||||.| ||| |||| ||
BPUM_1848___m 442 GCTATTTCTCCAGATCAGACCAAATCCTACACT--GAAACCTTTT---TA 486
BSNT_03594___ 489 --CATGATGACAGG-------------------GAAATTGCCGTCTTCAT 517
||||.|.||.|| |||||..|||
BPUM_1848___m 487 ACCATGCTAACCGGACGCACGCCAACCCAAGACGAAATCACCG------- 529
BSNT_03594___ 518 TGGAAGAACAGATTTTTGACCGGTCGCTCGTCCTGTACAGTGAGCATGAG 567
.||||||||...|.|||....|.||.|||||.||||||
BPUM_1848___m 530 ------------CTTTTGACCAAACACTCACATTATATAGTGAACATGAG 567
BSNT_03594___ 568 ATGCCGAATTCAACCTTTGCGGCCAGGGTCATTGCATCTACACATTCAGA 617
.|.||.||||||||.|||||.||.||.||||||||.||.||||||||.||
BPUM_1848___m 568 CTACCTAATTCAACATTTGCTGCTAGAGTCATTGCTTCCACACATTCTGA 617
BSNT_03594___ 618 TCTTTATGGGGCTTTGACTGGGGCTGTCGCTTCCCTGAAAGG-GAATCTT 666
..|.|||||.|||||.|||||.||..|..||||..|.||||| || |||
BPUM_1848___m 618 CATGTATGGTGCTTTTACTGGAGCAATTTCTTCATTAAAAGGTGA--CTT 665
BSNT_03594___ 667 -CACGGAGGAGCAAACGAAGCTGTGATGTATTTGCTTTTGGAGGCAAAAA 715
|||||.|||||.||.|||||.||.|||.||.|||||.|.||.|.|||||
BPUM_1848___m 666 GCACGGGGGAGCGAATGAAGCCGTCATGCATATGCTTCTCGAAGGAAAAA 715
BSNT_03594___ 716 CGACATCTGATTTTGAGCAGCTT--TTGC------------AAACAAAAC 751
|.||| || || |||| |||| |||...|.|
BPUM_1848___m 716 CAACA---GA-----AG--GCTTCCTTGCGCTCATTGAGCGAAAATTAGC 755
BSNT_03594___ 752 TGAAAAGAAAAGAAAAAATCATGGGCTTCGGCCACCGGGTGTATATGAAA 801
.|.|||| |||||.||.||||||||.|||||..||||.||.||||.|
BPUM_1848___m 756 CGCAAAG----GAAAAGATGATGGGCTTTGGCCATAGGGTATACATGAGA 801
BSNT_03594___ 802 AAAATGGACCCGAGAGC------------AC--TCATGATGAAAGAGGCG 837
|||||||||||.||||| || |||| ||||| .||
BPUM_1848___m 802 AAAATGGACCCAAGAGCCGCTCTTTTAAAACGATCAT--TGAAA---ACG 846
BSNT_03594___ 838 CT----GCAGCAATTA-TGCGATA-AAGCCGGTGACCATCGTTTATATGA 881
|| |.|.||| | .|||||| || ||.|| |||||
BPUM_1848___m 847 CTTACCGAATCAA--AGGGCGATACAA--CGCTG-----------TATGA 881
BSNT_03594___ 882 GATGTGCGAAGCGGGTGAGCGGC-----TGATGGAGAAGGAAAAAGGGCT 926
.|||||.|..||.| |||.||| |||..||||||.|||| .||
BPUM_1848___m 882 CATGTGTGTGGCAG--GAGAGGCATACATGAAAGAGAAGAAAAA---TCT 926
BSNT_03594___ 927 TTACCCGAATTTGGATTACTATGCTGCCCCAGTGTATTGGATGCTCGGCA 976
.||.||.||..|.|||||.|||||.||.||..|.||||...|||||||.|
BPUM_1848___m 927 CTATCCAAACCTTGATTATTATGCCGCACCTATTTATTATGTGCTCGGGA 976
BSNT_03594___ 977 TACCGATTCCTTTATATACGCCGATCT--TTTTCAGCGCGAGAACGTCCG 1024
|.||.|||.|..|.|||||.|||||.| |||.|.||..|.|.|.|| |
BPUM_1848___m 977 TTCCAATTTCACTTTATACACCGATTTTCTTTGCTGCAAGGGCAAGT--G 1024
BSNT_03594___ 1025 GTTTATGC-GCCCATGTGATCGAACAGCATACCAATAATCGGCTCTTCCG 1073
|.||| || ||.|||||.||.|||||||||....|||||||..|.|||.|
BPUM_1848___m 1025 GATTA-GCTGCTCATGTCATTGAACAGCATTTGCATAATCGCATTTTCAG 1073
BSNT_03594___ 1074 TCCCCGTGTCAGTTACATGGGCCCGCGA----------TATCA------- 1106
.||..|.|||.|.||..|.||.||..|| |.|||
BPUM_1848___m 1074 ACCAAGAGTCCGGTATTTAGGACCAAGAGGATTAAAAGTTTCAGATGATG 1123
BSNT_03594___ 1107 ----AACAAA-----ACCATGA 1119
||.||| | ||||
BPUM_1848___m 1124 ATAGAAAAAAGGGGGA--ATGA 1143
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