Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03593 and BPUM_1847
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:07
# Commandline: needle
# -asequence dna-align/BSNT_03593___prpD.1.24716.seq
# -bsequence dna-align/BPUM_1847___prpD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03593___prpD-BPUM_1847___prpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03593___prpD-BPUM_1847___prpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03593___prpD
# 2: BPUM_1847___prpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1547
# Identity: 984/1547 (63.6%)
# Similarity: 984/1547 (63.6%)
# Gaps: 238/1547 (15.4%)
# Score: 2923.5
#
#
#=======================================
BSNT_03593___ 1 ----AT------------GCCGA--AAACGGATC--GTGTTATCGAAGAA 30
|| |||.| ||||||||| .|.||| ||||||
BPUM_1847___p 1 ATGAATAAAACAGCAGTCGCCAATCAAACGGATCAGCTATTA--GAAGAA 48
BSNT_03593___ 31 ATCACAGACTATGTGCTTGA----GAAAGAGATTACTAGTGCCGAAGCGT 76
|||.|||.|||||...|.|| ||| |||||.|||...|||||..
BPUM_1847___p 49 ATCGCAGCCTATGCAGTAGACGGGGAA----ATTACAAGTAAAGAAGCCA 94
BSNT_03593___ 77 ATACAACAGCGGGGCATG-TAT-TGCTG---GATACCCTGGGCTGCGGGA 121
.|..||| ||||.| ||| ||||| ||.||.||.||.|||||.|
BPUM_1847___p 95 TTGAAAC-----GGCACGTTATGTGCTGATAGACACACTTGGTTGCGGAA 139
BSNT_03593___ 122 TCTTGGCGCTACGGTATCCGGAATGCACAAAGCTGCTTGGCCCGATTGTT 171
|..|||||||....|.|||.|||||.||.||||..|||||.|||||.||.
BPUM_1847___p 140 TGCTGGCGCTCAATTTTCCTGAATGTACGAAGCATCTTGGACCGATCGTC 189
BSNT_03593___ 172 CCAGGAACGACTGTGCCGAATGGAAGCAA-AGTGCCGGGAACGTCATATG 220
||.|||||...|||.||.||.|| ||||| |||.||.||.||.||.|.||
BPUM_1847___p 190 CCTGGAACTGTTGTACCTAACGG-AGCAAGAGTTCCAGGCACTTCCTTTG 238
BSNT_03593___ 221 TTCTCGATCCTGTGAGGGCAGCGTTTAATATCGGCTGCATGATTCGCTGG 270
|.||.||||||||....||.||.|||.||||.|||||.||||||||||||
BPUM_1847___p 239 TGCTAGATCCTGTTCAAGCCGCTTTTGATATAGGCTGTATGATTCGCTGG 288
BSNT_03593___ 271 CTCGATTACAACGATACGTGGCTGGCGGCGGAGTGGGGGCATCCATCCGA 320
.|.|||||.||.||.||||||||.||.|||||||||||.|||||.||.||
BPUM_1847___p 289 TTAGATTATAATGACACGTGGCTTGCAGCGGAGTGGGGACATCCGTCAGA 338
BSNT_03593___ 321 TAACTTGGGAGGAATCCTTGCCGCT--GCTGATTATGTATCA--AGAGTG 366
||||||.||.||.||..|.||.| | || ||||| |||.| |||...
BPUM_1847___p 339 TAACTTAGGCGGGATATTAGCTG-TAAGC-GATTA--TATTAGTAGAACA 384
BSNT_03593___ 367 AGGCTGTCTGAAGGAAAAGAGCCGTTAACAGTAAGCGACGTACTTGAGAT 416
.||||..|..|.|||.||||||||.|..|..|.|..|||||.|| |.||
BPUM_1847___p 385 CGGCTTGCAAACGGAGAAGAGCCGCTTTCGATGAATGACGTGCT--ACAT 432
BSNT_03593___ 417 --GATGATCAAAGCACACGAGATCCAAGGTGTGCTGGCGTTAGAAAACAG 464
|||..||||||||||.||.||.|||||.||.|||||.||||||||..|
BPUM_1847___p 433 GCGATCGTCAAAGCACATGAAATACAAGGCGTACTGGCATTAGAAAATTG 482
BSNT_03593___ 465 CTTAAATCGAGTTGGCCTTGACCATGTGCTGTTTGTCAAAGTTGCGACAA 514
.||.|||||...||||.|.||.||||||||.|||||||||||.||.||||
BPUM_1847___p 483 TTTGAATCGCAATGGCTTGGATCATGTGCTATTTGTCAAAGTAGCAACAA 532
BSNT_03593___ 515 CCGCTGTTG---CGGCAAAGCTTTTGGGCGGCGGAAGAGAAGAA------ 555
..||||||| ..|||..|||| |||||||.| |||.|
BPUM_1847___p 533 GTGCTGTTGTATGTGCATTGCTT------GGCGGAACA-AAGGAGGACGT 575
BSNT_03593___ 556 ------------ATCAAAAATGCGCTTTCGAATGCATGGATTGACAATGC 593
||||.|| |||.|| .||||||||.|
BPUM_1847___p 576 GCAGCACGTTTTATCACAA--GCGTTT------------GTTGACAATTC 611
BSNT_03593___ 594 AGCATTGAGGACATACCGCCATTCACCAAATACAGGCTCGCGTAAATCAT 643
..|..|.||.|||||.||.|||.|.||.||.|||||.||..|.|||||||
BPUM_1847___p 612 TCCGCTTAGAACATATCGTCATGCCCCGAACACAGGATCAAGGAAATCAT 661
BSNT_03593___ 644 GGGCGGCAGGAGATGCAACGAGCAGAGGTGT-TCATTTGGCGCTGATGTC 692
||||.|||||.||||||||.|||.|.||.|| ..|.|| ||..|||||.|
BPUM_1847___p 662 GGGCAGCAGGTGATGCAACAAGCCGCGGAGTGAGACTT-GCAATGATGAC 710
BSNT_03593___ 693 GTTAAAAGGGGAAATGGGTTATCCGACAGC--CTTGAGTGCACCGGGTTG 740
..|.||||||||||||||.||||..|| || ||| ||||||..|...||
BPUM_1847___p 711 ACTTAAAGGGGAAATGGGCTATCAAAC-GCCGCTT-AGTGCAGAGAAGTG 758
BSNT_03593___ 741 GGGGTTCCAAGACGTT-TTATTCAATAAGAAAGAGA------TCAAGCTT 783
|||.||..||||.||| |.|| |||||.|| |||..|||
BPUM_1847___p 759 GGGCTTTGAAGATGTTCTGAT-------GAAAGGGAAATCTCTCACACTT 801
BSNT_03593___ 784 GC-CTGTCCGCTCGACGCTTATGTCATGGAAAATGTGTTATTTAAAGTGT 832
|| |.| |||||.|...|.||.|||||.|||||||||.|.||.|||.|..
BPUM_1847___p 802 GCTCAG-CCGCTAGGATCATACGTCATCGAAAATGTGCTTTTCAAAATTG 850
BSNT_03593___ 833 CTTATCCTGCGGAATTTCACGCCCAGACAGCGGCGGAGTGC-GCCGTCAT 881
||||||||||.||.|||||||||||.||.||.||.|| .|| ||..|.||
BPUM_1847___p 851 CTTATCCTGCTGAGTTTCACGCCCAAACGGCTGCAGA-AGCTGCTATGAT 899
BSNT_03593___ 882 TCTTCA-CCCGCAGGTAAAGAACCGGATT-GACGAGATTGACCGTGTTGT 929
.||.|| ..|||.|..|||||.| |||| ||.||.||||||||.||.|.
BPUM_1847___p 900 CCTGCATGACGCTGTAAAAGATC--GATTGGATGAAATTGACCGGGTAGA 947
BSNT_03593___ 930 CATCAGAACGCATGAATCCGCTATCCGAATCATTGATAAAAAAGGCCCGC 979
.||.|.|||.||||||||.||.||.|||||.||.|||||.||.||.||||
BPUM_1847___p 948 GATTACAACACATGAATCGGCGATTCGAATTATCGATAAGAAGGGACCGC 997
BSNT_03593___ 980 TCCACAATCCGGCAGACCGTGATCACTGCCTCCAATACATTACAGCAATC 1029
|..|.|||||.||||||||||||||.|||.|.|||||.|||||.||.||.
BPUM_1847___p 998 TGTATAATCCAGCAGACCGTGATCATTGCTTGCAATATATTACTGCGATT 1047
BSNT_03593___ 1030 GGTTTGCTTTTTGGTGATATCACGGCACAGCATTATGAAGCTGAAACAGC 1079
||.|||.|.|.|||.||..|||||||..|.||||||||||..|||||.||
BPUM_1847___p 1048 GGATTGATCTATGGGGAGCTCACGGCTGACCATTATGAAGAAGAAACGGC 1097
BSNT_03593___ 1080 GAGTGATCCGAGAATAGATAAACTTCGTGATAAAATGGAGGTGACTGAAA 1129
|....|||||...||.|||...||.||.|||.||||||..||.|..|||.
BPUM_1847___p 1098 GCAAAATCCGGCTATTGATCGTCTCCGGGATCAAATGGTCGTCAAAGAAG 1147
BSNT_03593___ 1130 ATAAAACATATACCGAGGATTATTTGAAACCTGATAAA-CGTTCCATCTC 1178
|||.|..||||||.|.||||||||| |.|||.||.||| .|.|||||..|
BPUM_1847___p 1148 ATACACAATATACAGCGGATTATTT-AGACCCGAAAAAGAGATCCATTGC 1196
BSNT_03593___ 1179 AAATGCCGTTCAGGTTCATTTTAAAGACGGAACGAGCACGGA---AATGG 1225
|||....||.|||.||...||||||||||||||||..||.|| |||
BPUM_1847___p 1197 AAACAGTGTGCAGATTTTCTTTAAAGACGGAACGATGACAGACCGAAT-- 1244
BSNT_03593___ 1226 TGGAATGTGAGTTTCCCCTCGGCCATCGTTTTC----GAAGAGAGGAAG- 1270
||.||| |||.|.|||.||.||.||||| | ||||..||||||
BPUM_1847___p 1245 TGAAAT-TGAATATCCACTTGGTCATCG----CAGAAGAAGGCAGGAAGG 1289
BSNT_03593___ 1271 -----CAGTGC-CGAAA--------------CTGTTG--GAAAAGTTTTC 1298
|..||| ||||| |..||| ||..||.||||
BPUM_1847___p 1290 TATTCCTCTGCTCGAAAAGAAATGGATCTATCATTTGAAGACGAGATTTC 1339
BSNT_03593___ 1299 TG-----ACAA---------------------TCTCAAAACCCATTATCC 1322
.| |||| |.|||||||||| .|||
BPUM_1847___p 1340 CGCAAAAACAAGTGGATCACATTGTGTCACTCTGTCAAAACCCA-AATC- 1387
BSNT_03593___ 1323 TGATAAACAGCACAAACACATTTATGAGCGCTGTACCAGCTATGAGACAT 1372
.||.|| ||||| |.|| ||||||||| |||
BPUM_1847___p 1388 -AATTAA------AAACA-----ACGA---CTGTACCAG--------CAT 1414
BSNT_03593___ 1373 TACAAACGATGCGCGTAAATGAATTCGTAGACATGTTCTGCATGTAA 1419
| .|||.||| |.|||..|||.|||
BPUM_1847___p 1415 T----------------TATGGATT--------TATTCGTCATATAA 1437
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