Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03591 and BPUM_1846
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:07
# Commandline: needle
# -asequence dna-align/BSNT_03591___yqiQ.1.24716.seq
# -bsequence dna-align/BPUM_1846___yqiQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03591___yqiQ-BPUM_1846___yqiQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03591___yqiQ-BPUM_1846___yqiQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03591___yqiQ
# 2: BPUM_1846___yqiQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1013
# Identity: 626/1013 (61.8%)
# Similarity: 626/1013 (61.8%)
# Gaps: 202/1013 (19.9%)
# Score: 1815.0
#
#
#=======================================
BSNT_03591___ 1 ATGTCGTGGATCGTCAATAAGCAATC--GTCA--CAAGAGGAGCTTGCCG 46
|| |||||||||.|||.|..|||| |||| ||| |..|.||||
BPUM_1846___y 1 --GT-GTGGATCGTGAATGATGAATCAAGTCAAGCAA----ATTTAGCCG 43
BSNT_03591___ 47 -GGCGTTTCCGCAAG--CTGATG------TCAGCACCGGACATT--CTTC 85
.||.||| |||| |..||| ||||| || .|||
BPUM_1846___y 44 CAGCCTTT---CAAGAACAAATGCACAAATCAGC--------TTTATTTC 82
BSNT_03591___ 86 AAATTCCCGGCGCCCATGACGGGATGGC--CGCTTTGCTTGCGAAAGAAG 133
|||||||.||||..||.||.||.|||.| |||||| .|||||||.||.
BPUM_1846___y 83 AAATTCCAGGCGTTCACGATGGAATGTCTGCGCTTT--ATGCGAAAAAAA 130
BSNT_03591___ 134 CCGGTTTT-----TCTGCTATTTATTTGTCCGGTGCTGCCTATACAGCCA 178
..||.||| .|| ||||||| ||.||.||.||.|.|...||||
BPUM_1846___y 131 TGGGCTTTCAAGGGCT-CTATTTA----TCTGGCGCCGCTTTTTGTGCCA 175
BSNT_03591___ 179 GCAGGGGGCTGCCTGATTTAGGGATCATCACA-TCGGCAGAGATAGCTGA 227
|||..|||.||||||||.|.||.||.||| || ||..|.||.||.|||||
BPUM_1846___y 176 GCAAAGGGTTGCCTGATCTCGGCATGATC-CATTCAACGGAAATGGCTGA 224
BSNT_03591___ 228 ACGGGCCAAAGATCTTGTACGTGCAGCTGATCTGCCTCTGCTTGTGGATA 277
|...||.||.||..|..|.||.||..||.|.|||||.||..|.||.||||
BPUM_1846___y 225 AAAAGCGAAGGAAATCATTCGAGCTTCTCAGCTGCCGCTTTTGGTCGATA 274
BSNT_03591___ 278 TCGATACGGGATTTGGCGGTGTCTTAAATGCCGCCCGAACAGCCCGGGAG 327
|.|||||.||.|.|||||||||.||.|||||.||..|..|.||...|||.
BPUM_1846___y 275 TGGATACTGGCTATGGCGGTGTATTGAATGCTGCAAGGGCGGCAAAGGAA 324
BSNT_03591___ 328 ATGCTTG-AAGCAAGGGTAGCAGCCGTTCAAATAGAAGACCAGCAGCTTC 376
|||.|.| |||||| |||.|||||.||||||||.|||||.|||||..|.|
BPUM_1846___y 325 ATGGTAGAAAGCAA-GGTGGCAGCTGTTCAAATTGAAGATCAGCAAATGC 373
BSNT_03591___ 377 CAAAAAAATGCGGACATTTAAATGGCAAA-CAGCTAGTTCCGATCAAGGA 425
|.|||||||||||.||||||||.||.||| || ||.|||||..|..|.||
BPUM_1846___y 374 CGAAAAAATGCGGGCATTTAAACGGAAAATCA-CTTGTTCCAGTAGAAGA 422
BSNT_03591___ 426 AATGG-CGCAAAAAATAAAAGCCATTAAACAAGCGGCACCCTCCCTTATT 474
||||| ||| ||||||.|||||||||||||||||||||||..|.||| ||
BPUM_1846___y 423 AATGGTCGC-AAAAATCAAAGCCATTAAACAAGCGGCACCAACGCTT-TT 470
BSNT_03591___ 475 GTTG-TTGCCCGTACTGATGCCA-------GGGCGCA--GGAAGGGCTTG 514
|.|| ||||..|.||||||||.| ..|||.| |||| |
BPUM_1846___y 471 GGTGATTGCGAGAACTGATGCAAAATCTGTAAGCGGAATGGAA------G 514
BSNT_03591___ 515 ATGCCGCAATAAAACGTTCAGAGGC------TTACATTGAGGCGGGAGCG 558
|||.| ||...||| ||| ||||.|.||.||.|||||.
BPUM_1846___y 515 ATGTC---ATTCGACG------GGCCAATCTTTACGTAGAAGCAGGAGCT 555
BSNT_03591___ 559 GACGCAATTTTCCCGGAAGCGCT-------GCAGGCGGAGAATGAATTC- 600
||.||.|||||.||.||.||.|| |||| |.||.|||
BPUM_1846___y 556 GATGCTATTTTTCCTGAGGCACTTATCACAGCAG-------AGGACTTCA 598
BSNT_03591___ 601 CGCCAGTTTGCTGA-GCG--------TATCTCCGTTCCGCTCCTTGCGAA 641
||| | ||| |||....|.||||||.|||||.||
BPUM_1846___y 599 CGC----------ATGCGTCAAACAATATTAAAGGTCCGCTTCTTGCAAA 638
BSNT_03591___ 642 TATGACTGAATTTGGGAAAACGCCGTATTATCGTGCCGATGAATTCGAAG 691
.|||||.||.||||||||||||||.|||||||.|||.||.||.||...|
BPUM_1846___y 639 CATGACGGAGTTTGGGAAAACGCCTTATTATCATGCTGACGAGTTTTCA- 687
BSNT_03591___ 692 ATATG---GGGTTTCACATGGTGATATATCCTGTCACCTCGCTTCGAGCG 738
||| ||||||||.|||||.|||||.|||||..|.||.||..|||..
BPUM_1846___y 688 --ATGTTTGGGTTTCAGATGGTCATATACCCTGTGTCATCACTCAGAGTC 735
BSNT_03591___ 739 GCGGCAAAAGCTTGTGAGCGGATGTTTGGTT----------TGATGAAGG 778
||.||||||.|.|.||||| ||||..|| ||..|||||
BPUM_1846___y 736 GCTGCAAAATCATATGAGC----GTTTATTTACAGAAATCATGGAGAAGG 781
BSNT_03591___ 779 ------AGCACGGCTCACAAAAA----GAAGGACTTCATGATATGCAGAC 818
||||.|| || ||||||| |||||.||
BPUM_1846___y 782 GGACGCAGCAAGG--------AATGCTGAAGGAC--------ATGCAAAC 815
BSNT_03591___ 819 ACGAAAAGAACTGTACGATACGATTTCTTATTATGACTATGAAGCG---- 864
..||.||||.|||||.||.||||||..||||.||||.|||||.|.|
BPUM_1846___y 816 GAGACAAGAGCTGTATGAAACGATTCATTATGATGAATATGAGGAGATGG 865
BSNT_03591___ 865 --------TTAGACAAAACGAT--TGCC-----------AAGACCGTTTT 893
||||..|||||||| |||| ||||.|.|
BPUM_1846___y 866 ATCAGCATTTAGCGAAAACGATCCTGCCGGAAATCGGAAAAGAACAT--- 912
BSNT_03591___ 894 GCCTGACGAATAA 906
|| ||||
BPUM_1846___y 913 ------CG-ATAA 918
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