Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03116 and BPUM_1845
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_03116___yocA.1.24716.seq
# -bsequence dna-align/BPUM_1845___yocA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03116___yocA-BPUM_1845___yocA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03116___yocA-BPUM_1845___yocA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03116___yocA
# 2: BPUM_1845___yocA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 735
# Identity: 482/735 (65.6%)
# Similarity: 482/735 (65.6%)
# Gaps: 129/735 (17.6%)
# Score: 1537.5
#
#
#=======================================
BSNT_03116___ 1 GTGAAGAAAAAGAGAAA---AGGCTGTTTCGC-------TGCTGCGGGTT 40
..||||||||.||| |||.|||||.|| .|||||
BPUM_1845___y 1 ---TTGAAAAAGAAAAAAACAGGATGTTTTGCCATTTCAGGCTGC----- 42
BSNT_03116___ 41 TTATGATGATTTTTGTCTTTGTCATCGCCTCTTTTTT-------ATTGGT 83
.|.|.|||||||.|.|||||..||| |.|| ||| ||
BPUM_1845___y 43 --TTCACGATTTTTCTGTTTGTTTTCG------TATTAGCAGCCATT-GT 83
BSNT_03116___ 84 CCTG-CTTTTTTTCAACCGGGATTTAGTCAAAAAACTT-CCGATCGATAC 131
|.|| |.|||..||||..|| |||.||||||.|| |||||.|||||
BPUM_1845___y 84 CATGTCCTTTAATCAAAAGG-----AGTTAAAAAAGTTGCCGATTGATAC 128
BSNT_03116___ 132 AAAAACGATTGTTTTG--GAACGTTTAACCGATTACAAACC-CTTGGTGG 178
..||.|.||||||||| || |.||....||||.|||||| ||| ||.|
BPUM_1845___y 129 GGAATCAATTGTTTTGTCGA--GATTGGATGATTTCAAACCGCTT-GTAG 175
BSNT_03116___ 179 AAGAAGAGCTTGAAAG-CCAAGGACTCTCTAATTATACATCACTCATA-- 225
||..|||| ||.|.|| .|||| ||| ||.||||.| |||
BPUM_1845___y 176 AAACAGAG-TTAAGAGATCAAG---------ATT-TAGATCAAT-ATACC 213
BSNT_03116___ 226 ---TTA------GGCATGATGTATCAGGAGTCAAAAGGAAAAGGCAATGA 266
||| ||.|||||||||||.||.||||||||.|.||||...||
BPUM_1845___y 214 GCGTTAATCCTCGGTATGATGTATCAAGAATCAAAAGGCAGAGGCGGAGA 263
BSNT_03116___ 267 TCCCATGCAGTCCTCTGAATCTCTGGGGTTAAAACGCAATGAGATAACAG 316
|||.||||||||||||||||||||.||.||.|||||.|||||.||.|..|
BPUM_1845___y 264 TCCAATGCAGTCCTCTGAATCTCTTGGTTTGAAACGAAATGAAATCAATG 313
BSNT_03116___ 317 ACCCTCAACTCAGTGTTAAACAAGGCATCAAGCAATTTACCCTC----AT 362
|||||||....||..||||||||||..||.|.||.||| || ||
BPUM_1845___y 314 ACCCTCAGAAAAGCATTAAACAAGGAGTCCATCATTTT----TCTACTAT 359
BSNT_03116___ 363 GTACAAGACCGGTAAGGAAAAAGGCGTGGATTTGGATACCATTATTCAAA 412
|||||||...||.|||.||||||||||.||||||||.|||||.|||||||
BPUM_1845___y 360 GTACAAGCATGGGAAGAAAAAAGGCGTTGATTTGGAAACCATAATTCAAA 409
BSNT_03116___ 413 GCTACAACATGGG----GGCAGGTTACATTGATTTTGTAGCTGAACATGG 458
||||.||.||||| ||| ||.|||||||||||.||..||.|.||
BPUM_1845___y 410 GCTATAATATGGGAATTGGC----TATATTGATTTTGTTGCAAAAAACGG 455
BSNT_03116___ 459 AGGAACGCATACTGAGGAATTGGCAAAACAATACTCCGAGCAGCAAGTCA 508
.||.|..|||.|.|||.||||||||||.||||||||..|..|||||||.|
BPUM_1845___y 456 GGGGAAACATTCCGAGAAATTGGCAAAGCAATACTCTAAAAAGCAAGTGA 505
BSNT_03116___ 509 AAAAAAATCCTGATCTGTATACTTGCGGGGGAAATGCGAAA---AATTTC 555
||..|||.||.||..|.|||||.|||||.||.|| .||| ||.|||
BPUM_1845___y 506 AACGAAACCCAGAAGTCTATACGTGCGGAGGCAA---CAAAGATAACTTC 552
BSNT_03116___ 556 CGCTATCCGTATTGCTACGGTGATTATACGTATGCAGAAAAAGTAAAAGA 605
|||||.||.|||||||.||||||.|..||.|||||.||||||||||||||
BPUM_1845___y 553 CGCTACCCATATTGCTTCGGTGACTTCACTTATGCTGAAAAAGTAAAAGA 602
BSNT_03116___ 606 AAAAACAAAAACTGTTGAAGAATCTTTGCAGGTTGCAACACTTGAAACCA 655
||||||.|||||.||||||||| ||.| ||||| .
BPUM_1845___y 603 AAAAACGAAAACAGTTGAAGAA--------------AAGA--TGAAA--T 634
BSNT_03116___ 656 TGGAAT-----------CCAAGGCTCAT-GAATAA 678
|||..| ||| |||| | |||
BPUM_1845___y 635 TGGCTTCGTCATCCTCACCA----TCATCG--TAA 663
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