Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03111 and BPUM_1842
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_03111___yobW.1.24716.seq
# -bsequence dna-align/BPUM_1842.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03111___yobW-BPUM_1842.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03111___yobW-BPUM_1842.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03111___yobW
# 2: BPUM_1842
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 676
# Identity: 308/676 (45.6%)
# Similarity: 308/676 (45.6%)
# Gaps: 281/676 (41.6%)
# Score: 579.5
#
#
#=======================================
BSNT_03111___ 1 ATGCATCTTACAC-----------------TTCA-------GAGCGTT-T 25
||| |||| |||| |||..|| |
BPUM_1842 1 ATG------ACACATAACGTGTGGCAGTTGTTCATGATTGGGAGTATTAT 44
BSNT_03111___ 26 ATCCTGCCATGATCATCATCTTTTTTCTGTATAAAAAAATTAAAAGGTCC 75
|| |||||..||||.|..||| ||||.|
BPUM_1842 45 AT-------TGATCTGCATCATGATTC-GTATGA---------------- 70
BSNT_03111___ 76 ATCGGATACCAGCCGCTGAAGCCCCGCTGGCTGTTCACCCGTATCATTCT 125
||||.|| .||.|||| ..|.||| |||.|.||| |||||..||
BPUM_1842 71 ATCGAAT--GAGACGCT----ATCAGCT---TGTACGCCC-TATCAGGCT 110
BSNT_03111___ 126 TT-------------TCTCGCTGTTTGCTTTTGGCCTTTCAATCTTCAGC 162
|| |||| |||||.||||||
BPUM_1842 111 TTTGATGAGAATGTATCTC----------TTTGGTCTTTCA--------- 141
BSNT_03111___ 163 GCC---ATTCACCCTTTTTTATATGGA--------------TATC-TCAT 194
||| ||||.|| |.|.|.|.||| |||| ||||
BPUM_1842 142 GCCCTTATTCTCC---TATCAGAAGGATGGCAAAATCATAGTATCATCAT 188
BSNT_03111___ 195 ---------TTTGGGCATTCTTGGCGGATGGCTCCT---------TGTCT 226
|.|.|||||.|||...|||.|...||| ||.||
BPUM_1842 189 CTATGCTGCTATTGGCATGCTTTTTGGAAGCAGCCTCGCTGTTCATGCCT 238
BSNT_03111___ 227 TT-------TTCGCT----AAGAAAAACATCTCC-------TTTGAAAAA 258
.| |||| | |||||.||.||..|| |.||||||
BPUM_1842 239 ATCAGACGATTCG-TATGAAAGAAGAAAATGGCCGGTTGTATATGAAAA- 286
BSNT_03111___ 259 CGCAGAGGAAAGATCTATTTTCGGACTCATATTTGGGTAGAGGTGATTCT 308
.|||.||| .||| ||| |.||
BPUM_1842 287 ---CGAGTAAA----------TGGA-------TTG---AAAG-------- 305
BSNT_03111___ 309 CTTAACTTTATTTCTATCAAGATTTCTGTATCGAGTGACGGAGCTTTATC 358
|||.|.|||||.|.| |.||| ||||.|| ||||..|.
BPUM_1842 306 CTTCATTTTATGTTT-----GTTTT---TATCTAG-------GCTTAGTT 340
BSNT_03111___ 359 TTACCTCACC----TGATCT---AAACAGCCTTGGATCA-TACAGTCAGT 400
||| |.| |||.|| |||| |.||.||||| .|.|.|||||
BPUM_1842 341 TTA----AGCTGGTTGAGCTGACAAAC--CATTCGATCACCAAAATCAGT 384
BSNT_03111___ 401 ------------------CA-ATCGGAA-CG--GACCCTCTGACAATTGG 428
|| ||||.|| || ||..|..||||.||...
BPUM_1842 385 GTCGTTGAACTGTATCAGCACATCGTAAGCGATGATGCGATGACCATGCT 434
BSNT_03111___ 429 CGTCTGTTTTCTGATAGCCGTTTATTATATCGGTT-TTTCTTCTTTTGTC 477
|..||.||||||..||||.|.|||.||| ||| |||.|||||||..|
BPUM_1842 435 CAGCTTTTTTCTTTTAGCGGCTTACTAT----GTTGTTTTTTCTTTTCAC 480
BSNT_03111___ 478 ATCAAGCTCAGCA--GAAACGAACTCGA-ACA---GCA-CGAATACAATA 520
||.|.| ..|||| .|||||| |||| ||| ||| | ||.| |||
BPUM_1842 481 ATGATG-AAAGCAAGTAAACGA--TCGACACATGTGCATC--ATGC-ATA 524
BSNT_03111___ 521 AAGAAAAAGACATCCTTGCCCGCTAA 546
|
BPUM_1842 525 A------------------------- 525
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