Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03110 and BPUM_1841
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_03110.1.24716.seq
# -bsequence dna-align/BPUM_1841___yobV.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03110-BPUM_1841___yobV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03110-BPUM_1841___yobV.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03110
# 2: BPUM_1841___yobV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1260
# Identity: 580/1260 (46.0%)
# Similarity: 580/1260 (46.0%)
# Gaps: 471/1260 (37.4%)
# Score: 1204.5
#
#
#=======================================
BSNT_03110 1 ATGCTTATCCGGTCAGAAATAGTAGCTGAAATAAATACTGAACACAAAAA 50
BPUM_1841___y 0 -------------------------------------------------- 0
BSNT_03110 51 AGAAGGGGAAACCCCTGTTTTCATAGCATATGCAAGGTGTATTCCGCCGC 100
BPUM_1841___y 0 -------------------------------------------------- 0
BSNT_03110 101 ATAATAGATATGCCCAAGCTTTATCAAAATGTTATGATTGTTTTTGTTGG 150
BPUM_1841___y 0 -------------------------------------------------- 0
BSNT_03110 151 AAAATACAAGAAGAAAAGGTGCGCAGAATGAAACTGGAACGTTTGTTAGC 200
||||||.|.||.|||.|.|||.|
BPUM_1841___y 1 ---------------------------ATGAAAATTGACCGTATTTTATC 23
BSNT_03110 201 GATGGTTGTGTTATTGATCAGCAAAAAACAAGTGCAGGCTGCAGAGCTTG 250
.|..||..||||..|.||.|||||.||.|||||.|||||...|||.||||
BPUM_1841___y 24 TACTGTGATGTTGCTCATTAGCAAGAAGCAAGTACAGGCGAAAGATCTTG 73
BSNT_03110 251 CTGAGCTGTTTGAAGTATCTGTCAGA--------ACAATTTACCGTGATA 292
||||.||....||||| || ||.|||||.|||||||
BPUM_1841___y 74 CTGAACTTCACGAAGT--------GAGCACGAGGACCATTTATCGTGATA 115
BSNT_03110 293 TTGAGACGATCAATAGGGCTGGTATTCCGATTGTGACCTCACAGGGTTCC 342
||||.||.||||||...||.||.||.||..|||||||..|.||.||..|.
BPUM_1841___y 116 TTGATACCATCAATCAAGCAGGAATCCCTGTTGTGACAACCCAAGGAGCA 165
BSNT_03110 343 GGGGGCGGAATTGGCATCA-----TGGAAACGTATCGGCTTGAAAGAGAG 387
||.|||||.||| ||| ||...|| |||||..|.||.|.|.|.
BPUM_1841___y 166 GGTGGCGGCATT----TCACTTGTTGAGGAC-TATCGTTTAGAGAAAAAA 210
BSNT_03110 388 TGGCTGAAGGAGGAGGA-ATTG-------TTTGCAATTGCTTCCGCTTTG 429
|...|.|..||.||.|| |||| ||| ||..|| |.|||
BPUM_1841___y 211 TTATTTACCGATGATGACATTGAAGTCATTTT--AACAGC-----CCTTG 253
BSNT_03110 430 CAAAGCGTTTCATCTATGTATGA------ACCAATTTCTCACAGCA---C 470
||||| ||| |||| ||...||| |.||.| .
BPUM_1841___y 254 -AAAGC---------ATG-ATGAGTGCGTACTCCTTT---AAAGAAAGTG 289
BSNT_03110 471 AGCCTAT----CAAAAAATCAAACACCTTATACCTGAGCAATCTGCTCAA 516
|||.|.| .|||||||.|||...|||||.||...||||.|.|.|.||
BPUM_1841___y 290 AGCATGTTCTGAAAAAAATTAAATCGCTTATTCCCACGCAAACAGGTGAA 339
BSNT_03110 517 GCATTTAAGCACCAAA--CAGAAAAATG-GTTTATTGACATGACGGCATG 563
.||.||| |||.|..||| .||.|||||..|.|...|.||
BPUM_1841___y 340 ---------AACGAAAAGCAGCATCATGTCTTCATTGATTTAAGCTCCTG 380
BSNT_03110 564 GGGCCATACCGAGGATCAAAAGGCGCTTCGTGAGAAAATCAGCGCC-GC- 611
||| |||||.|..|..|..|||..|..|||.|| ||
BPUM_1841___y 381 GGG--------------AAAAGACAGTCAGGCAGAGCAGAAGCTCCAGCT 416
BSNT_03110 612 CATCGAT-CGGTT--GTCAACG-----ATATCT----TTTACATATAC-- 647
|||..|| |.|.| ||||.|| |||..| |||||.||| |
BPUM_1841___y 417 CATTCATACAGCTGCGTCAGCGCACCAATACATTCAGTTTACTTAT-CGT 465
BSNT_03110 648 -AAGCGCAAGCGGGGAAACACTTCTTCGTGAAAC--TGAACCTTATACAT 694
|.|||.|| ||.|||||.|||| |..|.||| .||||||||||||.
BPUM_1841___y 466 AATGCGAAA--GGTGAAACTCTTC--CACGCAACGTGGAACCTTATACAC 511
BSNT_03110 695 TGGTTTGCAAGGCGGGGCACTGGTATTTATATGCCTACTGCCTG-GTAAG 743
|.||||..||.|.|.||||.||||||||.|||||.|..|| .|| ||||.
BPUM_1841___y 512 TCGTTTTAAAAGGGAGGCATTGGTATTTGTATGCGTTTTG-TTGTGTAAA 560
BSNT_03110 744 AAATGATTTTCGTTTTTTTAA----ACTAAACCGGATGAAAGATCT---- 785
|||.|.||||||..|.||.|| |||| |.||||..|.|||
BPUM_1841___y 561 AAAAGCTTTTCGCCTGTTCAAGCTGACTA----GAATGACGGGTCTTGTC 606
BSNT_03110 786 ---------GGCTATCTTACATC-----AGACCTTTATCAGAA---AAGA 818
||.||| ||.||.| ||| .|||.|| ||||
BPUM_1841___y 607 GCCATTTCAGGGTAT-TTTCAACCGAAAAGA-----GTCAAAAACGAAGA 650
BSNT_03110 819 CATTCAGC--TGGA--CACT-TTGCCATGGGATAGAA-ATTGGTACCAGA 862
.| ||| |||| .||| |||.|| |||| | ||||..
BPUM_1841___y 651 GA---AGCCTTGGAATGACTCTTGGCA------AGAACA-----ACCATC 686
BSNT_03110 863 AG--GGCCGTTTAA--CTGAATTGGTTATTCTTGTTCAGCCGGCAGCACG 908
|| .|||.|.|.| ||.| ||||| .|.|.||||
BPUM_1841___y 687 AGTCAGCCCTGTCACGCTCA---GGTTA-----------ACAGAAGCA-- 720
BSNT_03110 909 TCAG-------CGTATAGGTGAATGGTTCGGATATGATGTCCTTCACTGT 951
|||| .|||.|| |||||| |.|.||||
BPUM_1841___y 721 TCAGTGGGGAAAGTAAAG--GAATGG---GTAGATGA------------- 752
BSNT_03110 952 GAGGAA-GA--TGAA-ATCTG--CCG--GGCAGTGATTTCACTT-CCAGA 992
||| || |||| .|||| |.| ||||.|.|| ||| || |
BPUM_1841___y 753 ---GAATGAATTGAACGTCTGTTCAGACGGCACTTAT----CTTGCC--A 793
BSNT_03110 993 AGATCAATG--------GCTGATCGGTT------TTT--TGCTCCAGTTC 1026
..||||.|| ..||||.|||| ||| |..||||.||
BPUM_1841___y 794 CCATCACTGTACCTCTTCATGATTGGTTAAATAGTTTCCTATTCCACTT- 842
BSNT_03110 1027 GGAAAGGATATTGAGGTTCTGCAGCC-----TCTTCATATACG--GGATA 1069
||||.|.|.||.| |||| |.|.|| |.||
BPUM_1841___y 843 -------------AGGTCCAGAAGTCGACATTCTT--TCTCCGAAGCAT- 876
BSNT_03110 1070 GAGTAAAAGAAACCATTCAT---CACATGCAAAAAAT----------ATA 1106
||.||||||.|..||.|| ||..|| |||.||| ||.
BPUM_1841___y 877 --GTCAAAGAAGCATTTGATCTCCAGTTG-AAACAATTTCTCAAACGATT 923
BSNT_03110 1107 TGAAACCTGA 1116
.|||||.|||
BPUM_1841___y 924 AGAAACTTGA 933
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