Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03107 and BPUM_1839
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_03107___yobT.1.24716.seq
# -bsequence dna-align/BPUM_1839.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03107___yobT-BPUM_1839.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03107___yobT-BPUM_1839.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03107___yobT
# 2: BPUM_1839
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 813
# Identity: 453/813 (55.7%)
# Similarity: 453/813 (55.7%)
# Gaps: 204/813 (25.1%)
# Score: 1086.5
#
#
#=======================================
BSNT_03107___ 1 ATGAGAATTACTCAGTACCAA------ACGGTTTG--GCAGCTGACTTTT 42
||||||.|.| ||| ||.||.|| .|||||.||.||.
BPUM_1839 1 ATGAGATTGA--------CAACTTTTGACCGTCTGCACCAGCTCACATTA 42
BSNT_03107___ 43 TTTCCAGCATTGTTTCCGGTTAATTGCTATTTAGTAGAGGAAGAAAACGA 92
.|.|||..|||.||.|||||.||.||.|||.|..|.||||||||.||.|.
BPUM_1839 43 ATGCCAAGATTATTCCCGGTAAACTGTTATGTTTTTGAGGAAGAGAATGG 92
BSNT_03107___ 93 AGTCACCCTTATTGATGCCGC------ACTGCCAGGCAGCTATAAA-GGG 135
|.|.|.|.|.||||||||.|| |.| |||||| ||| ..|
BPUM_1839 93 ACTGATCTTAATTGATGCTGCGTTAAAAAT----GGCAGC---AAACTCG 135
BSNT_03107___ 136 ATTATTCAAGCTGTGAATCAGCTTG------GAAAACCGCTTCAGCATAT 179
||.|| .||||..|||.| |||.| |||.|||
BPUM_1839 136 ATCAT--------CGAATTTGCTCGACAAAAGAACA-------AGCCTAT 170
BSNT_03107___ 180 T-------TTA--CTGACTCATGCACATGGGGACCATGTCGGATCACTGG 220
| ||| ||.||||||...|||..|||.|||.||||..||.|.|
BPUM_1839 171 TAACAAAATTATTCTTACTCATAGTCATATGGATCATATCGGCGCATTAG 220
BSNT_03107___ 221 ATACATTGGCACAAACA----TTTCCGCATGCAAAGGTC-ATGATCTCGG 265
||..|.|| |||.| |||||..|.||....||| || .|.||..
BPUM_1839 221 ATGAAGTG----AAAAAGGTTTTTCCAGAGGCTGTCGTCTAT-TTATCAA 265
BSNT_03107___ 266 AACGGGATTC------ATTCTTGCTCCAAGGTGACACATCCTTGC----- 304
||||.|||.| || ||| |.||||||...|||||.|
BPUM_1839 266 AACGCGATGCCCGCCTAT--TTG----AGGGTGACTTGTCCTTACTTCCT 309
BSNT_03107___ 305 GGCAAGATGAGCCGCAG-----ACGCCTATAAAAGGAGGTATTCCGAAAC 349
||| ||.||.||| | ||.|||||..||.||.||||||
BPUM_1839 310 GGC-----GAACCCCAGCAAAAA-----ATCAAAGGCAGTTTTTCGAAAC 349
BSNT_03107___ 350 ACATACAAACAAAGCCTCACC--AACTGCT-------GACGGGCGGTGAA 390
|.||.|..||||| ||| |..|||| ||.||| |.|||
BPUM_1839 350 ATATTCGTACAAA-----ACCGGATGTGCTTGTCGAAGAAGGG-GATGA- 392
BSNT_03107___ 391 ACAATTGGTTCTCTGCTTGCCATTCCAACACCGGGCCATACACCGGGCAG 440
.|||||..|.|||...|.||||.|.|||||.||.||.|||||.|||||
BPUM_1839 393 --GATTGGACCGCTGAAAGTCATTGCGACACCAGGGCACACACCTGGCAG 440
BSNT_03107___ 441 CATGTCATTTCTTGATAC-AAGAAACGGC----ACTTTAATAGCAGGAGA 485
||||||||.|||| |.||||.|.| |.|.|.|||||.||.||
BPUM_1839 441 -----CATTTCTTTATACGATGAAAGGTCAAAAATTGTGATAGCCGGTGA 485
BSNT_03107___ 486 TGCGTTTCAGTTGC-----GCGGAGGAATCGCTGTATCAGGT--CAGATA 528
|||..|| ||..| ||| ||| |||| ||| |.|.|.
BPUM_1839 486 TGCCCTT--GTAACAAAAGGCG--------GCT-TATC-GGTTACGGGTG 523
BSNT_03107___ 529 AA-----ATGGACGTTTCCTTTTCCCGCCTTCGCCACATGGAATAAGGAG 573
|| .|||||.|||||||||||.||.||.||.||||||.|||..||.
BPUM_1839 524 AACTTCGGTGGACTTTTCCTTTTCCGGCTTTTGCTACATGGGATACAGAA 573
BSNT_03107___ 574 GAGGCCATCAAAAGCGC---ACAATTGCTCGCCGATAAGGCGCCT-TCCT 619
...||..|||||||||| |.||||.||.|| |...||||| ||||
BPUM_1839 574 ACTGCACTCAAAAGCGCCGAAAAATTACTGGC----ACTTCGCCTATCCT 619
BSNT_03107___ 620 GTCTCGCTGTCGGACATGGAAATTTCCTGAGATCACC-CGCAGAGCGGAT 668
||||.||||..||||||||..||.||.|.|.|..||| | ||
BPUM_1839 620 GTCTTGCTGCAGGACATGGCGATCTCATCATAGAACCTC---------AT 660
BSNT_03107___ 669 GAGA-----CAGGCAATCC-------AAAAAGCA----------AAGAAA 696
||.| ||.|| |.| ||||.||| ||||||
BPUM_1839 661 GAAAAGCTTCAAGC--TGCCGTTCATAAAAGGCAGCAGCAGCTGAAGAAA 708
BSNT_03107___ 697 GGATGA------- 702
|| .||
BPUM_1839 709 GG-GGAGCAGTAA 720
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