Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03106 and BPUM_1838
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_03106___yobS.1.24716.seq
# -bsequence dna-align/BPUM_1838___yobS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03106___yobS-BPUM_1838___yobS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03106___yobS-BPUM_1838___yobS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03106___yobS
# 2: BPUM_1838___yobS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 661
# Identity: 359/661 (54.3%)
# Similarity: 359/661 (54.3%)
# Gaps: 173/661 (26.2%)
# Score: 775.0
#
#
#=======================================
BSNT_03106___ 1 ATGTCACCAAGAATAGGTTTGACCC---AAAAAATGATT-ATAGACGCTG 46
.||||.||||||||.||..|.||.| |||||||.||| ||| |||
BPUM_1838___y 1 GTGTCTCCAAGAATGGGAATCACGCAAGAAAAAATCATTGATA----CTG 46
BSNT_03106___ 47 CAGCGGAGATTGCCGATCAGGAAGGGGTAAATGGTGTCTC-------AC- 88
||||.|...|||..||| |||| |.|||.|.|| ||
BPUM_1838___y 47 CAGCCGCACTTGTTGAT---GAAG------AGGGTTTTTCTGCTTTGACC 87
BSNT_03106___ 89 -TTGCGGCACTTTCTAAAAAAATGAATGTGCGTCCCCCGTCATTGTATAA 137
||||..||.|.|||||||.|.||||..|..|.||.||.||..|.|||||
BPUM_1838___y 88 ATTGCTACATTGTCTAAAAGACTGAACATCAGACCACCTTCCCTTTATAA 137
BSNT_03106___ 138 CCA--TATCAACGGGCTGCAAGCGA-TCAGAGCAGAACTTGCTGTTAGAG 184
.|| |||| .||.||.||.|..| |||| ||.|.|||.||.|..|.||
BPUM_1838___y 138 TCATGTATC--TGGTCTTCAGGAAATTCAG-GCGGCACTCGCAGAAAAAG 184
BSNT_03106___ 185 GACTGACAAAGCTTTTTGATCAAATGGCGGACTCCGTAACCGAACG---- 230
|||||||.|.|||...||| |||.|||..|| .||||||.||..|
BPUM_1838___y 185 GACTGACCATGCTACGTGA--AAAAGGCATAC-ACGTAACAGAGGGGCTG 231
BSNT_03106___ 231 ---AAAG--GGAGATTCCGCGAT-GCTTTCTTTAGCACATGCA-TATGTT 273
|||| |||| |.|.|.| || ||||..||.| || ||||||
BPUM_1838___y 232 GATAAAGAAGGAG---CTGTGTTAGC---CTTTGCCAAA--CAGTATGTT 273
BSNT_03106___ 274 GATTTTGCAATT----GAAAATCCCGGATATTATGAAGCGGCTCTGCTTA 319
.|.|||| | |||.||||.||...|||||||||.|| |||
BPUM_1838___y 274 CAATTTG----TCCGCGAACATCCAGGTCTTTATGAAGCAGC----CTT- 314
BSNT_03106___ 320 AGGTTC--------AGGACAAA----------------CGGA-------- 337
||| |||||||| |.||
BPUM_1838___y 315 ---TTCACATATGGAGGACAAAAAAGTAAGAAGTGAGGCCGAGCGCCTTG 361
BSNT_03106___ 338 TGGAAATCGTC-------TC-TGACCAAATTGTCTGTCTT-GTGACGAAG 378
|.|||.|.||| || |||| |.||.|| |||.|.|||
BPUM_1838___y 362 TTGAATTTGTCCAATCGATCATGAC--------CCGTTTTGGTGTCAAAG 403
BSNT_03106___ 379 CTGCTCATTGAAAACGGCTATGCAAGTGAAAAGACTGCCATTCATGCGAC 428
|| |||.||| ||.|| ||||.|..
BPUM_1838___y 404 -----------------------AA--GAAGAGA-TGACA--CATGTGGT 425
BSNT_03106___ 429 AAGGGGGCTCAGAAGCCTGCTGCATGGCTTTACTG----TTTTAATCGCA 474
.||.||..|.||||||.|..||||.||||||..|| ||..|||
BPUM_1838___y 426 CAGAGGATTAAGAAGCTTATTGCACGGCTTTGGTGATATTTCAAAT---- 471
BSNT_03106___ 475 AAAGAAGCATTTGAACGTGAGGAGGACA--TTTTAGAAAGCCTGTCATTT 522
|||.|.|.||||.||| ||..||.||| ||..|||.|| |||.|
BPUM_1838___y 472 AAAAAGGGATTTCAAC--GAAAAGAACAGCTTGAAGAGAG--TGTGA--- 514
BSNT_03106___ 523 TCAATTCGGACA-----TTTTTGTCAGGATTATT--AATAAATAATAAAA 565
.|.||.|||.|| |.|.|.|||||..|.|| || |||.||.|...
BPUM_1838___y 515 GCTATGCGGTCAAGCTTTATATCTCAGGTGTGTTGCAA-AAAGAAGATCT 563
BSNT_03106___ 566 ATATTATGTAA 576
.|.||||..|
BPUM_1838___y 564 GTCTTATTGA- 573
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