Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02946 and BPUM_1836
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_02946___yndH.1.24716.seq
# -bsequence dna-align/BPUM_1836.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02946___yndH-BPUM_1836.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02946___yndH-BPUM_1836.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02946___yndH
# 2: BPUM_1836
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 727
# Identity: 383/727 (52.7%)
# Similarity: 383/727 (52.7%)
# Gaps: 215/727 (29.6%)
# Score: 803.0
#
#
#=======================================
BSNT_02946___ 1 ---GTGAGTTCGAT--TTATGAAAAATCAATTATTAACTATCATTTGCTG 45
|| .|||| || |.|| .||.|.||..||| ||.||.| .|||
BPUM_1836 1 ATGGT-CGTTC-ATCGTCAT--CAAGTAAAGGATT-ACGATAA---ACTG 42
BSNT_02946___ 46 CATCCCAAGCTGCGGAAACGGTACCAATTAGA--------CGGGTCTCAA 87
|||||.||.|| |||.| ||| ||.|
BPUM_1836 43 CATCCAAAACT----AAAAG---------AGAGATACAACCGCG------ 73
BSNT_02946___ 88 ACATT--CAGCGGGACGGGAACGATGTCAGAAATAAGCGG-------AGG 128
|||| |.||.|.| ||.||.|||...||||||.|||| ||.
BPUM_1836 74 -CATTTACTGCTGAA--GGTACTATGGAGGAAATAGGCGGCGGGTCAAGA 120
BSNT_02946___ 129 CTCTTT-------TCTGGTTAGAATG------CTGTTAAAGCTGGGTGTT 165
|||.|| ||| |.|||||| ||.|| |.|.||||
BPUM_1836 121 CTCATTCGATTGATCT--TCAGAATGGGTCCACTATT-----TCGTTGTT 163
BSNT_02946___ 166 TTTTTCAGATGCTTCTTTTCAGAAAGAGGCAAAGACATTCCATTTACAAT 215
||||.| ||||.|||||..||.|||||||.||
BPUM_1836 164 TTTTCC-------------CAGAGAGAGGGGAAAACATTCCTTT------ 194
BSNT_02946___ 216 ACAAAATAG--AACTTGTCTTTTGAAATCACAACATA---------CAGG 254
|.||||.| |||..|.|.|||| |.|||| ||| .|||
BPUM_1836 195 -CCAAATTGTCAACGAGCCCTTTG---TGACAA-ATAAGGGGGAGGAAGG 239
BSNT_02946___ 255 AATAGAATGGAATCGTACATTTATCTTT---AAAGGCAAAAAACGTTTCT 301
.||..|.|||.||||.||.||| |.||| |||| ||..|.||...||
BPUM_1836 240 GATGCACTGGTATCGAACGTTT-TATTTCCCAAAG--AAGGAGCGGCACT 286
BSNT_02946___ 302 TTGACGC-GATAATGAT-ATATGACGAGAAAGAAA---ATAGAATACTTG 346
||||.|| ||| ||||| || |||..|| ||.| |||...||||.|
BPUM_1836 287 TTGATGCAGAT-ATGATCAT-TGATCAG---GAGAGTCATACCGTACTAG 331
BSNT_02946___ 347 ATTTCTTCGGCAAACCTCATCTGCTGCTGTCTG-------TTTTGACGTT 389
|.|..||.||.||.|||...||.||..||||.| |||| ||..|
BPUM_1836 332 ACTATTTTGGAAAGCCTAGACTTCTTGTGTCAGAGCTTCATTTT-ACAGT 380
BSNT_02946___ 390 --CGAGGCATCTCATGACGGCTCTCTTACGATCACATCGGGAAAGCAAT- 436
|.|.|||| |||| |||| .|||||| ||||
BPUM_1836 381 AACAAAGCAT--------GGCT-TCTT----GCACATC-------CAATC 410
BSNT_02946___ 437 -----GGC------TATTGATATGCGGAAAAAGAAT-CCCGTTGCCGAAA 474
||| |.|||||.|.||| ||.||||| .|||.||||...|
BPUM_1836 411 CGGCCGGCAGAAGTTTTTGATGTTCGG-AAGAGAATGGCCGCTGCCTTCA 459
BSNT_02946___ 475 TGGCTGACCGGT-----ACAT----CCGTAGTTTGCGAAACGTTT---GA 512
|||||..|.||| |.|| |.|.||..|.|||...||.| |.
BPUM_1836 460 TGGCTTTCTGGTGTGTCAGATGTAACAGAAGGCTACGATGAGTATGCAGG 509
BSNT_02946___ 513 TGAAAAAAAGAATTGTTTCACCATTGAAGTGCATGTGCAAAATACAATTC 562
|||| |..||||||||.||.||.|||.|||||....|..
BPUM_1836 510 TGAA------------TATACCATTGATGTCCACGTGAAAAATCGCCTGT 547
BSNT_02946___ 563 TTGGCACTCTTTTCTTTTATAAAGGAACGTTTCAGGAGGAAGAGAGAGAA 612
||||.||||||||....|||||||| .||||| .|.|||.||.|
BPUM_1836 548 TTGGTACTCTTTTTACATATAAAGG-TCGTTT-------TACAGAAAGGA 589
BSNT_02946___ 613 ----TCATGCAACGA--AATGGCATAG 633
||||| |.|| ||
BPUM_1836 590 TGTCTCATG--ATGAATAA-------- 606
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