Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03102 and BPUM_1833

See Amino acid alignment / Visit BSNT_03102 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence dna-align/BSNT_03102___csaA.1.24716.seq
#    -bsequence dna-align/BPUM_1833___csaA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03102___csaA-BPUM_1833___csaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03102___csaA-BPUM_1833___csaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03102___csaA
# 2: BPUM_1833___csaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 344
# Identity:     235/344 (68.3%)
# Similarity:   235/344 (68.3%)
# Gaps:          22/344 ( 6.4%)
# Score: 683.0
# 
#
#=======================================

BSNT_03102___      1 ATGGCAGTTATTGAAGACTTTGAGAAATTGGATATCAGAACG--GGAACA     48
                     |||||||.|||||||.|.|||..|...||.|||||..|  ||  ||.||.
BPUM_1833___c      1 ATGGCAGATATTGAACAGTTTTTGGCGTTAGATATTCG--CGTTGGGACG     48

BSNT_03102___     49 ATTGTAAAAGCGGAAGAATTTCCTGAAGCAAGGGTACCGGCTATCAAGCT     98
                     ||..||.||||.|||...|||.|.||.|||||.||.||.||..|.|||||
BPUM_1833___c     49 ATCATAGAAGCAGAATTTTTTGCAGAGGCAAGAGTGCCTGCGTTGAAGCT     98

BSNT_03102___     99 TGTGATAGATTTTGG-GACTGAAATCGGCATAAAACAATCGAGCGCACAA    147
                     ...|||.|||||||| || .|||||.||..||||.|||||.||.||.||.
BPUM_1833___c     99 AAAGATTGATTTTGGTGA-AGAAATTGGTGTAAAGCAATCTAGTGCTCAG    147

BSNT_03102___    148 ATCACGAAGCGTTACA-AGCCG-GAAGGTCTCATCAACAAGCAAGTCATA    195
                     .||||.||||||||.| |||.| |||  |||.|....|||.|||.||.||
BPUM_1833___c    148 CTCACAAAGCGTTATACAGCAGAGAA--TCTTACTGGCAAACAAATCGTA    195

BSNT_03102___    196 GCAGTCGTGAACTTTCCGCCCCGCCGAATCGCCGGATTTAAATCGGAAGT    245
                     ||.||||||||.||||||||..|..||||.||.||.||.|||||.|||||
BPUM_1833___c    196 GCGGTCGTGAATTTTCCGCCAAGAAGAATTGCTGGGTTCAAATCAGAAGT    245

BSNT_03102___    246 -CTTGGTCCTCGGCGGCATACCCGGCC--AGGGCGACGTCGTCCTTTTGC    292
                      ||| |||.|.||.|||||.||  |.|  |.|..|||||.|   ||||.|
BPUM_1833___c    246 GCTT-GTCTTAGGTGGCATGCC--GTCAAAAGAAGACGTGG---TTTTAC    289

BSNT_03102___    293 -AGC--CGGATCAGCCTGTCCCAAACGGCACAAAAATCGGATAA    333
                      |||  |.|||.|.||.||....||.||.||||||||.||.|||
BPUM_1833___c    290 TAGCGACAGATGAACCGGTTGAGAATGGAACAAAAATAGGGTAA    333


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