Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02903 and BPUM_1830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_02903___xylR.1.24716.seq
# -bsequence dna-align/BPUM_1830___xylR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02903___xylR-BPUM_1830___xylR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02903___xylR-BPUM_1830___xylR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02903___xylR
# 2: BPUM_1830___xylR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1194
# Identity: 835/1194 (69.9%)
# Similarity: 835/1194 (69.9%)
# Gaps: 72/1194 ( 6.0%)
# Score: 2783.0
#
#
#=======================================
BSNT_02903___ 1 GTGGATATCGCTGATCAAACCTTTGTCAAAAAAGTAAATCAAAAGTTATT 50
.||||||||||||||||.|.||||||.||||||.|||||||||||.||||
BPUM_1830___x 1 ATGGATATCGCTGATCAGAACTTTGTGAAAAAAATAAATCAAAAGCTATT 50
BSNT_02903___ 51 ATTAAAAGAAATCCTTAAAAATTCACCTATTTCAAGAGCAAAATTATCTG 100
||||||||||||.||..|..||.|.||.|||||.|||||.||||||||||
BPUM_1830___x 51 ATTAAAAGAAATTCTCCAGCATGCGCCAATTTCTAGAGCCAAATTATCTG 100
BSNT_02903___ 101 AAATGACTGGATTAAATAAATCAACTGTTTCATCACAGGTAAACACGTTA 150
||...|||||.|||||||||||.||||||||.||.||.||||..||.|||
BPUM_1830___x 101 AACGCACTGGGTTAAATAAATCGACTGTTTCCTCTCAAGTAAGTACATTA 150
BSNT_02903___ 151 ATGAAAGAAAATCTGGTATTTGAAATAGGTCAAGGAAAATCAAGTGGCGG 200
||||||||..|.||.||.|.|||.||.||||||||..|.||.||.|||||
BPUM_1830___x 151 ATGAAAGAGCAACTCGTCTATGAGATCGGTCAAGGTGAGTCTAGCGGCGG 200
BSNT_02903___ 201 AAGAAGACCTGTCATGCTTGTTTTTAATAAAAAGGCAGGATACTCCGTAG 250
.|||||||||||..|.||..|.|||||||||...|||||.|.||||.|.|
BPUM_1830___x 201 GAGAAGACCTGTTTTACTCATGTTTAATAAACGTGCAGGCTGCTCCATCG 250
BSNT_02903___ 251 GAATAGATGTTGGTGTGGATTATATCAATGGCATTTTAACAGACCTTGAA 300
|.||.|||||.||.||.||||||.||||.|||||||||||.|||||||||
BPUM_1830___x 251 GGATTGATGTCGGCGTTGATTATGTCAACGGCATTTTAACCGACCTTGAA 300
BSNT_02903___ 301 GGAACGATCGTTC--------TTGATCAATACTGCCATTTGGAATCCAA- 341
||..|.|||.||| ..|||||| .||.|||| |||
BPUM_1830___x 301 GGGTCCATCCTTCACGAAGAGCAGATCAA-CCTCCCAT--------CAAG 341
BSNT_02903___ 342 TTCTCCAGAAATAACGAAAGACATTTTGATTGATATGATTCATCACTTTA 391
|.||||.||..|.||.|.|..|||.||.|.|||..|.||.||.||.||.|
BPUM_1830___x 342 TGCTCCTGATGTGACCATACGCATATTAACTGAATTAATACAGCAGTTGA 391
BSNT_02903___ 392 TTACGCATATGCCCCAATCTCCGTACGGGCTTATTGGTATAGGTATTTGC 441
|..|.||.||.|||...||.||.|||||.||.||.|||||.|||.|.||.
BPUM_1830___x 392 TGTCCCAAATCCCCTCTTCCCCATACGGACTCATAGGTATTGGTCTATGT 441
BSNT_02903___ 442 GTGCCTGGACTCATTGATAAAGATCAAAAAATTGTTTTCACTCCGAACTC 491
.|.||.|||||..|.|||...|||||..||||.||.||.||.|||.|.||
BPUM_1830___x 442 ATACCGGGACTAGTGGATGCCGATCAGCAAATCGTGTTTACGCCGCATTC 491
BSNT_02903___ 492 CAACTGGAGAGATATTGACTTAAAATCTTCGATACAAGA-GAAGTACAAT 540
.||.||||.|.||.|||||.|.|||....||.|.||||| |.|.|.|||
BPUM_1830___x 492 TAAATGGAAAAATGTTGACCTGAAAAAGGCGCTCCAAGACGCATTCCAA- 540
BSNT_02903___ 541 GTGCCTGTTTTTATTGAAAATGAGGCAAATGCTGGCGCATATGGAGAGAA 590
||.||.||.||.|||||||||||.||||||||.||.||||||||.||.||
BPUM_1830___x 541 GTACCAGTCTTCATTGAAAATGAAGCAAATGCCGGTGCATATGGTGAAAA 590
BSNT_02903___ 591 AGTATTTGGAGCTGCAAAAAATCACGATAACATT--ATTTACGTAAGTAT 638
|.|.|||||.||.||.|||.||.|.||| |||| |||||.|.|||.||
BPUM_1830___x 591 AATCTTTGGGGCCGCTAAACATTATGAT--CATTTGATTTATGCAAGCAT 638
BSNT_02903___ 639 CAGCACAGGGATAGGGATCGGTGTTATTATCAACAATCATTTATATAGAG 688
|.||||.||.||.||.||.||..|||||||.||..||||||||||.||||
BPUM_1830___x 639 CGGCACTGGTATTGGTATTGGGATTATTATTAATCATCATTTATACAGAG 688
BSNT_02903___ 689 GAGTAAGCGGCTTCTCTGGAGAAATGGGACATATGACAATAGACTTTAAT 738
|||.|..||||||.|||||.|||||||||||||||||.||.|||||||||
BPUM_1830___x 689 GAGCATACGGCTTTTCTGGTGAAATGGGACATATGACCATCGACTTTAAT 738
BSNT_02903___ 739 GGTCCTAAATGCAGTTGCGGAAACCGAGGCTGCTGGGAATTGTATGCTTC 788
||.||.|.||||||.||||||||.||.||.||||||||.||||||||.||
BPUM_1830___x 739 GGACCAACATGCAGCTGCGGAAATCGTGGTTGCTGGGAGTTGTATGCATC 788
BSNT_02903___ 789 AGAGAAGGCTTTATTAACA-TCTCTTCAGACTAAAGCGAAAAAAC---TG 834
.|||||.|||||.|| .|| ||||||||.||.||.| ||||.| |.
BPUM_1830___x 789 TGAGAAAGCTTTGTT-TCAGTCTCTTCAAACAAATG---AAAAGCCCATC 834
BSNT_02903___ 835 TCCTATCAAGATATCATAGACCTCGCCCATC--TGAATGATATCGGAACC 882
|||.|.||||||.|...|.|.||.| ||.| |.||||||||...|||.
BPUM_1830___x 835 TCCCACCAAGATGTGGAACAGCTGG--CAACGTTAAATGATATGAAAACG 882
BSNT_02903___ 883 TTAAACGCATTACAGAATTTTGGATTCTATTTAGGAATAGGCCTTACCAA 932
.|.||.||.||.|..||.|||||.||.||..|.||..|.||.||.||.||
BPUM_1830___x 883 CTCAATGCCTTGCGCAACTTTGGTTTTTACCTTGGGGTCGGTCTCACAAA 932
BSNT_02903___ 933 TATTTTGAATACTTTCAACCCACAGGCCGTAATTTTAAGAAATAGCATAA 982
..|..||.||||.||.|||||.||.||..|.||||||.||||.|...|.|
BPUM_1830___x 933 CGTCCTGCATACCTTTAACCCCCAAGCAATTATTTTACGAAACAAAGTGA 982
BSNT_02903___ 983 TTGAATCGCATCCTATGGTTTTA-----AATTCAATGAGAAGTGAAGTGT 1027
||||||||||.||.|..|||||| .|||||| ||| |||||.|
BPUM_1830___x 983 TTGAATCGCAGCCAACAGTTTTACGTGTGATTCAA-GAG----GAAGTAT 1027
BSNT_02903___ 1028 CGTCAAGGGTTTATTCCCAATTAGGCAATAGCT---AT---GAATTATTG 1071
|.||||||.|..||.|.||||| .|||| || ||..|..|.
BPUM_1830___x 1028 CCTCAAGGATAGATACTCAATT------CAGCTCACATGTCGAGCTGCTA 1071
BSNT_02903___ 1072 CCATCTTCCTTAGGACAGAATGCACCGGCATTAGGAATGTCCTCCATTGT 1121
||.||.||.||||||||.||.|||||||.||||||.|||.|.||..|.||
BPUM_1830___x 1072 CCTTCATCATTAGGACATAACGCACCGGTATTAGGGATGACATCTCTCGT 1121
BSNT_02903___ 1122 GATTGATCATTTTCTGGACATGA----------TTACAATGTAA 1155
.|||||....|||||| ||.|| |.||.|||.
BPUM_1830___x 1122 CATTGAAGCCTTTCTG--CAAGATGCCACCCTCTCACCATGA-- 1161
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