Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02903 and BPUM_1830

See Amino acid alignment / Visit BSNT_02903 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:28
# Commandline: needle
#    -asequence dna-align/BSNT_02903___xylR.1.24716.seq
#    -bsequence dna-align/BPUM_1830___xylR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02903___xylR-BPUM_1830___xylR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02903___xylR-BPUM_1830___xylR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02903___xylR
# 2: BPUM_1830___xylR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1194
# Identity:     835/1194 (69.9%)
# Similarity:   835/1194 (69.9%)
# Gaps:          72/1194 ( 6.0%)
# Score: 2783.0
# 
#
#=======================================

BSNT_02903___      1 GTGGATATCGCTGATCAAACCTTTGTCAAAAAAGTAAATCAAAAGTTATT     50
                     .||||||||||||||||.|.||||||.||||||.|||||||||||.||||
BPUM_1830___x      1 ATGGATATCGCTGATCAGAACTTTGTGAAAAAAATAAATCAAAAGCTATT     50

BSNT_02903___     51 ATTAAAAGAAATCCTTAAAAATTCACCTATTTCAAGAGCAAAATTATCTG    100
                     ||||||||||||.||..|..||.|.||.|||||.|||||.||||||||||
BPUM_1830___x     51 ATTAAAAGAAATTCTCCAGCATGCGCCAATTTCTAGAGCCAAATTATCTG    100

BSNT_02903___    101 AAATGACTGGATTAAATAAATCAACTGTTTCATCACAGGTAAACACGTTA    150
                     ||...|||||.|||||||||||.||||||||.||.||.||||..||.|||
BPUM_1830___x    101 AACGCACTGGGTTAAATAAATCGACTGTTTCCTCTCAAGTAAGTACATTA    150

BSNT_02903___    151 ATGAAAGAAAATCTGGTATTTGAAATAGGTCAAGGAAAATCAAGTGGCGG    200
                     ||||||||..|.||.||.|.|||.||.||||||||..|.||.||.|||||
BPUM_1830___x    151 ATGAAAGAGCAACTCGTCTATGAGATCGGTCAAGGTGAGTCTAGCGGCGG    200

BSNT_02903___    201 AAGAAGACCTGTCATGCTTGTTTTTAATAAAAAGGCAGGATACTCCGTAG    250
                     .|||||||||||..|.||..|.|||||||||...|||||.|.||||.|.|
BPUM_1830___x    201 GAGAAGACCTGTTTTACTCATGTTTAATAAACGTGCAGGCTGCTCCATCG    250

BSNT_02903___    251 GAATAGATGTTGGTGTGGATTATATCAATGGCATTTTAACAGACCTTGAA    300
                     |.||.|||||.||.||.||||||.||||.|||||||||||.|||||||||
BPUM_1830___x    251 GGATTGATGTCGGCGTTGATTATGTCAACGGCATTTTAACCGACCTTGAA    300

BSNT_02903___    301 GGAACGATCGTTC--------TTGATCAATACTGCCATTTGGAATCCAA-    341
                     ||..|.|||.|||        ..|||||| .||.||||        ||| 
BPUM_1830___x    301 GGGTCCATCCTTCACGAAGAGCAGATCAA-CCTCCCAT--------CAAG    341

BSNT_02903___    342 TTCTCCAGAAATAACGAAAGACATTTTGATTGATATGATTCATCACTTTA    391
                     |.||||.||..|.||.|.|..|||.||.|.|||..|.||.||.||.||.|
BPUM_1830___x    342 TGCTCCTGATGTGACCATACGCATATTAACTGAATTAATACAGCAGTTGA    391

BSNT_02903___    392 TTACGCATATGCCCCAATCTCCGTACGGGCTTATTGGTATAGGTATTTGC    441
                     |..|.||.||.|||...||.||.|||||.||.||.|||||.|||.|.||.
BPUM_1830___x    392 TGTCCCAAATCCCCTCTTCCCCATACGGACTCATAGGTATTGGTCTATGT    441

BSNT_02903___    442 GTGCCTGGACTCATTGATAAAGATCAAAAAATTGTTTTCACTCCGAACTC    491
                     .|.||.|||||..|.|||...|||||..||||.||.||.||.|||.|.||
BPUM_1830___x    442 ATACCGGGACTAGTGGATGCCGATCAGCAAATCGTGTTTACGCCGCATTC    491

BSNT_02903___    492 CAACTGGAGAGATATTGACTTAAAATCTTCGATACAAGA-GAAGTACAAT    540
                     .||.||||.|.||.|||||.|.|||....||.|.||||| |.|.|.||| 
BPUM_1830___x    492 TAAATGGAAAAATGTTGACCTGAAAAAGGCGCTCCAAGACGCATTCCAA-    540

BSNT_02903___    541 GTGCCTGTTTTTATTGAAAATGAGGCAAATGCTGGCGCATATGGAGAGAA    590
                     ||.||.||.||.|||||||||||.||||||||.||.||||||||.||.||
BPUM_1830___x    541 GTACCAGTCTTCATTGAAAATGAAGCAAATGCCGGTGCATATGGTGAAAA    590

BSNT_02903___    591 AGTATTTGGAGCTGCAAAAAATCACGATAACATT--ATTTACGTAAGTAT    638
                     |.|.|||||.||.||.|||.||.|.|||  ||||  |||||.|.|||.||
BPUM_1830___x    591 AATCTTTGGGGCCGCTAAACATTATGAT--CATTTGATTTATGCAAGCAT    638

BSNT_02903___    639 CAGCACAGGGATAGGGATCGGTGTTATTATCAACAATCATTTATATAGAG    688
                     |.||||.||.||.||.||.||..|||||||.||..||||||||||.||||
BPUM_1830___x    639 CGGCACTGGTATTGGTATTGGGATTATTATTAATCATCATTTATACAGAG    688

BSNT_02903___    689 GAGTAAGCGGCTTCTCTGGAGAAATGGGACATATGACAATAGACTTTAAT    738
                     |||.|..||||||.|||||.|||||||||||||||||.||.|||||||||
BPUM_1830___x    689 GAGCATACGGCTTTTCTGGTGAAATGGGACATATGACCATCGACTTTAAT    738

BSNT_02903___    739 GGTCCTAAATGCAGTTGCGGAAACCGAGGCTGCTGGGAATTGTATGCTTC    788
                     ||.||.|.||||||.||||||||.||.||.||||||||.||||||||.||
BPUM_1830___x    739 GGACCAACATGCAGCTGCGGAAATCGTGGTTGCTGGGAGTTGTATGCATC    788

BSNT_02903___    789 AGAGAAGGCTTTATTAACA-TCTCTTCAGACTAAAGCGAAAAAAC---TG    834
                     .|||||.|||||.|| .|| ||||||||.||.||.|   ||||.|   |.
BPUM_1830___x    789 TGAGAAAGCTTTGTT-TCAGTCTCTTCAAACAAATG---AAAAGCCCATC    834

BSNT_02903___    835 TCCTATCAAGATATCATAGACCTCGCCCATC--TGAATGATATCGGAACC    882
                     |||.|.||||||.|...|.|.||.|  ||.|  |.||||||||...|||.
BPUM_1830___x    835 TCCCACCAAGATGTGGAACAGCTGG--CAACGTTAAATGATATGAAAACG    882

BSNT_02903___    883 TTAAACGCATTACAGAATTTTGGATTCTATTTAGGAATAGGCCTTACCAA    932
                     .|.||.||.||.|..||.|||||.||.||..|.||..|.||.||.||.||
BPUM_1830___x    883 CTCAATGCCTTGCGCAACTTTGGTTTTTACCTTGGGGTCGGTCTCACAAA    932

BSNT_02903___    933 TATTTTGAATACTTTCAACCCACAGGCCGTAATTTTAAGAAATAGCATAA    982
                     ..|..||.||||.||.|||||.||.||..|.||||||.||||.|...|.|
BPUM_1830___x    933 CGTCCTGCATACCTTTAACCCCCAAGCAATTATTTTACGAAACAAAGTGA    982

BSNT_02903___    983 TTGAATCGCATCCTATGGTTTTA-----AATTCAATGAGAAGTGAAGTGT   1027
                     ||||||||||.||.|..||||||     .|||||| |||    |||||.|
BPUM_1830___x    983 TTGAATCGCAGCCAACAGTTTTACGTGTGATTCAA-GAG----GAAGTAT   1027

BSNT_02903___   1028 CGTCAAGGGTTTATTCCCAATTAGGCAATAGCT---AT---GAATTATTG   1071
                     |.||||||.|..||.|.|||||      .||||   ||   ||..|..|.
BPUM_1830___x   1028 CCTCAAGGATAGATACTCAATT------CAGCTCACATGTCGAGCTGCTA   1071

BSNT_02903___   1072 CCATCTTCCTTAGGACAGAATGCACCGGCATTAGGAATGTCCTCCATTGT   1121
                     ||.||.||.||||||||.||.|||||||.||||||.|||.|.||..|.||
BPUM_1830___x   1072 CCTTCATCATTAGGACATAACGCACCGGTATTAGGGATGACATCTCTCGT   1121

BSNT_02903___   1122 GATTGATCATTTTCTGGACATGA----------TTACAATGTAA   1155
                     .|||||....||||||  ||.||          |.||.|||.  
BPUM_1830___x   1122 CATTGAAGCCTTTCTG--CAAGATGCCACCCTCTCACCATGA--   1161


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.